Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 20 | NC_000020.11:g.62174127C>T |
GRCh37.p13 chr 20 | NC_000020.10:g.60749183C>T |
SS18L1 RefSeqGene | NG_034255.1:g.35408C>T |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
SS18L1 transcript variant 2 | NM_001301778.1:c. | N/A | Intron Variant |
SS18L1 transcript variant 1 | NM_198935.2:c. | N/A | Intron Variant |
SS18L1 transcript variant 3 | NR_125980.1:n. | N/A | Intron Variant |
SS18L1 transcript variant 4 | NR_125981.1:n. | N/A | Intron Variant |
SS18L1 transcript variant X1 | XM_005260389.3:c. | N/A | Intron Variant |
SS18L1 transcript variant X2 | XM_005260391.1:c. | N/A | Intron Variant |
SS18L1 transcript variant X3 | XM_011528764.2:c. | N/A | Intron Variant |
SS18L1 transcript variant X6 | XM_011528767.1:c. | N/A | Intron Variant |
SS18L1 transcript variant X4 | XM_017027784.1:c. | N/A | Intron Variant |
SS18L1 transcript variant X5 | XR_001754230.1:n. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.862 | T=0.138 |
1000Genomes | American | Sub | 694 | C=0.960 | T=0.040 |
1000Genomes | East Asian | Sub | 1008 | C=0.818 | T=0.182 |
1000Genomes | Europe | Sub | 1006 | C=0.943 | T=0.057 |
1000Genomes | Global | Study-wide | 5008 | C=0.867 | T=0.133 |
1000Genomes | South Asian | Sub | 978 | C=0.780 | T=0.220 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.939 | T=0.061 |
The Genome Aggregation Database | African | Sub | 8714 | C=0.867 | T=0.133 |
The Genome Aggregation Database | American | Sub | 838 | C=0.940 | T=0.060 |
The Genome Aggregation Database | East Asian | Sub | 1612 | C=0.819 | T=0.181 |
The Genome Aggregation Database | Europe | Sub | 18474 | C=0.933 | T=0.066 |
The Genome Aggregation Database | Global | Study-wide | 29940 | C=0.907 | T=0.092 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.880 | T=0.120 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.914 | T=0.085 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.939 | T=0.061 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs6142969 | 0.000278 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr20 | 60699508 | 60699722 | E067 | -49461 |
chr20 | 60699843 | 60699932 | E067 | -49251 |
chr20 | 60699969 | 60700019 | E067 | -49164 |
chr20 | 60700310 | 60700390 | E067 | -48793 |
chr20 | 60715392 | 60715442 | E067 | -33741 |
chr20 | 60715880 | 60715967 | E067 | -33216 |
chr20 | 60716099 | 60716159 | E067 | -33024 |
chr20 | 60716203 | 60716340 | E067 | -32843 |
chr20 | 60720485 | 60720577 | E067 | -28606 |
chr20 | 60720701 | 60720751 | E067 | -28432 |
chr20 | 60720756 | 60720865 | E067 | -28318 |
chr20 | 60724121 | 60724344 | E067 | -24839 |
chr20 | 60724352 | 60725622 | E067 | -23561 |
chr20 | 60759554 | 60759672 | E067 | 10371 |
chr20 | 60787046 | 60787096 | E067 | 37863 |
chr20 | 60707399 | 60707444 | E068 | -41739 |
chr20 | 60707653 | 60707764 | E068 | -41419 |
chr20 | 60707863 | 60707928 | E068 | -41255 |
chr20 | 60708070 | 60708447 | E068 | -40736 |
chr20 | 60708453 | 60708503 | E068 | -40680 |
chr20 | 60708675 | 60708729 | E068 | -40454 |
chr20 | 60708862 | 60708957 | E068 | -40226 |
chr20 | 60709050 | 60709425 | E068 | -39758 |
chr20 | 60709445 | 60709671 | E068 | -39512 |
chr20 | 60709743 | 60709839 | E068 | -39344 |
chr20 | 60716099 | 60716159 | E068 | -33024 |
chr20 | 60720701 | 60720751 | E068 | -28432 |
chr20 | 60720756 | 60720865 | E068 | -28318 |
chr20 | 60721140 | 60721640 | E068 | -27543 |
chr20 | 60731829 | 60732463 | E068 | -16720 |
chr20 | 60759554 | 60759672 | E068 | 10371 |
chr20 | 60759772 | 60759826 | E068 | 10589 |
chr20 | 60789093 | 60789262 | E068 | 39910 |
chr20 | 60699508 | 60699722 | E069 | -49461 |
chr20 | 60699843 | 60699932 | E069 | -49251 |
chr20 | 60699969 | 60700019 | E069 | -49164 |
chr20 | 60709853 | 60710267 | E069 | -38916 |
chr20 | 60716099 | 60716159 | E069 | -33024 |
chr20 | 60716203 | 60716340 | E069 | -32843 |
chr20 | 60720290 | 60720337 | E069 | -28846 |
chr20 | 60720390 | 60720482 | E069 | -28701 |
chr20 | 60720485 | 60720577 | E069 | -28606 |
chr20 | 60720701 | 60720751 | E069 | -28432 |
chr20 | 60720756 | 60720865 | E069 | -28318 |
chr20 | 60721140 | 60721640 | E069 | -27543 |
chr20 | 60724121 | 60724344 | E069 | -24839 |
chr20 | 60724352 | 60725622 | E069 | -23561 |
chr20 | 60725819 | 60725977 | E069 | -23206 |
chr20 | 60726413 | 60726502 | E069 | -22681 |
chr20 | 60731596 | 60731799 | E069 | -17384 |
chr20 | 60731829 | 60732463 | E069 | -16720 |
chr20 | 60766944 | 60766994 | E069 | 17761 |
chr20 | 60716203 | 60716340 | E070 | -32843 |
chr20 | 60721140 | 60721640 | E070 | -27543 |
chr20 | 60721738 | 60721788 | E070 | -27395 |
chr20 | 60721950 | 60722004 | E070 | -27179 |
chr20 | 60722058 | 60722132 | E070 | -27051 |
chr20 | 60722142 | 60722256 | E070 | -26927 |
chr20 | 60722328 | 60722465 | E070 | -26718 |
chr20 | 60724121 | 60724344 | E070 | -24839 |
chr20 | 60724352 | 60725622 | E070 | -23561 |
chr20 | 60731241 | 60731537 | E070 | -17646 |
chr20 | 60731596 | 60731799 | E070 | -17384 |
chr20 | 60731829 | 60732463 | E070 | -16720 |
chr20 | 60759554 | 60759672 | E070 | 10371 |
chr20 | 60759772 | 60759826 | E070 | 10589 |
chr20 | 60699843 | 60699932 | E071 | -49251 |
chr20 | 60699969 | 60700019 | E071 | -49164 |
chr20 | 60706746 | 60706896 | E071 | -42287 |
chr20 | 60706978 | 60707047 | E071 | -42136 |
chr20 | 60707175 | 60707338 | E071 | -41845 |
chr20 | 60707399 | 60707444 | E071 | -41739 |
chr20 | 60707653 | 60707764 | E071 | -41419 |
chr20 | 60707863 | 60707928 | E071 | -41255 |
chr20 | 60708070 | 60708447 | E071 | -40736 |
chr20 | 60708453 | 60708503 | E071 | -40680 |
chr20 | 60708675 | 60708729 | E071 | -40454 |
chr20 | 60708862 | 60708957 | E071 | -40226 |
chr20 | 60709050 | 60709425 | E071 | -39758 |
chr20 | 60709445 | 60709671 | E071 | -39512 |
chr20 | 60709743 | 60709839 | E071 | -39344 |
chr20 | 60709853 | 60710267 | E071 | -38916 |
chr20 | 60715796 | 60715876 | E071 | -33307 |
chr20 | 60715880 | 60715967 | E071 | -33216 |
chr20 | 60716099 | 60716159 | E071 | -33024 |
chr20 | 60716203 | 60716340 | E071 | -32843 |
chr20 | 60720290 | 60720337 | E071 | -28846 |
chr20 | 60720390 | 60720482 | E071 | -28701 |
chr20 | 60720485 | 60720577 | E071 | -28606 |
chr20 | 60720701 | 60720751 | E071 | -28432 |
chr20 | 60720756 | 60720865 | E071 | -28318 |
chr20 | 60722724 | 60722768 | E071 | -26415 |
chr20 | 60722813 | 60722871 | E071 | -26312 |
chr20 | 60722876 | 60722952 | E071 | -26231 |
chr20 | 60722955 | 60723005 | E071 | -26178 |
chr20 | 60723827 | 60723979 | E071 | -25204 |
chr20 | 60724121 | 60724344 | E071 | -24839 |
chr20 | 60724352 | 60725622 | E071 | -23561 |
chr20 | 60726413 | 60726502 | E071 | -22681 |
chr20 | 60731241 | 60731537 | E071 | -17646 |
chr20 | 60731596 | 60731799 | E071 | -17384 |
chr20 | 60759554 | 60759672 | E071 | 10371 |
chr20 | 60759772 | 60759826 | E071 | 10589 |
chr20 | 60787565 | 60787710 | E071 | 38382 |
chr20 | 60699508 | 60699722 | E072 | -49461 |
chr20 | 60699843 | 60699932 | E072 | -49251 |
chr20 | 60699969 | 60700019 | E072 | -49164 |
chr20 | 60700310 | 60700390 | E072 | -48793 |
chr20 | 60706978 | 60707047 | E072 | -42136 |
chr20 | 60707175 | 60707338 | E072 | -41845 |
chr20 | 60707399 | 60707444 | E072 | -41739 |
chr20 | 60707653 | 60707764 | E072 | -41419 |
chr20 | 60707863 | 60707928 | E072 | -41255 |
chr20 | 60708070 | 60708447 | E072 | -40736 |
chr20 | 60708453 | 60708503 | E072 | -40680 |
chr20 | 60708675 | 60708729 | E072 | -40454 |
chr20 | 60708862 | 60708957 | E072 | -40226 |
chr20 | 60709050 | 60709425 | E072 | -39758 |
chr20 | 60709445 | 60709671 | E072 | -39512 |
chr20 | 60709743 | 60709839 | E072 | -39344 |
chr20 | 60715796 | 60715876 | E072 | -33307 |
chr20 | 60715880 | 60715967 | E072 | -33216 |
chr20 | 60716099 | 60716159 | E072 | -33024 |
chr20 | 60716203 | 60716340 | E072 | -32843 |
chr20 | 60720485 | 60720577 | E072 | -28606 |
chr20 | 60720701 | 60720751 | E072 | -28432 |
chr20 | 60720756 | 60720865 | E072 | -28318 |
chr20 | 60721140 | 60721640 | E072 | -27543 |
chr20 | 60724121 | 60724344 | E072 | -24839 |
chr20 | 60724352 | 60725622 | E072 | -23561 |
chr20 | 60726413 | 60726502 | E072 | -22681 |
chr20 | 60726699 | 60726776 | E072 | -22407 |
chr20 | 60731241 | 60731537 | E072 | -17646 |
chr20 | 60731596 | 60731799 | E072 | -17384 |
chr20 | 60734707 | 60734862 | E072 | -14321 |
chr20 | 60735047 | 60735255 | E072 | -13928 |
chr20 | 60759554 | 60759672 | E072 | 10371 |
chr20 | 60759772 | 60759826 | E072 | 10589 |
chr20 | 60766944 | 60766994 | E072 | 17761 |
chr20 | 60767661 | 60767714 | E072 | 18478 |
chr20 | 60768619 | 60768669 | E072 | 19436 |
chr20 | 60768695 | 60768745 | E072 | 19512 |
chr20 | 60699843 | 60699932 | E073 | -49251 |
chr20 | 60699969 | 60700019 | E073 | -49164 |
chr20 | 60706746 | 60706896 | E073 | -42287 |
chr20 | 60706978 | 60707047 | E073 | -42136 |
chr20 | 60707175 | 60707338 | E073 | -41845 |
chr20 | 60707399 | 60707444 | E073 | -41739 |
chr20 | 60707653 | 60707764 | E073 | -41419 |
chr20 | 60707863 | 60707928 | E073 | -41255 |
chr20 | 60708070 | 60708447 | E073 | -40736 |
chr20 | 60715638 | 60715725 | E073 | -33458 |
chr20 | 60715796 | 60715876 | E073 | -33307 |
chr20 | 60715880 | 60715967 | E073 | -33216 |
chr20 | 60716099 | 60716159 | E073 | -33024 |
chr20 | 60716203 | 60716340 | E073 | -32843 |
chr20 | 60720290 | 60720337 | E073 | -28846 |
chr20 | 60720390 | 60720482 | E073 | -28701 |
chr20 | 60720485 | 60720577 | E073 | -28606 |
chr20 | 60720701 | 60720751 | E073 | -28432 |
chr20 | 60720756 | 60720865 | E073 | -28318 |
chr20 | 60721140 | 60721640 | E073 | -27543 |
chr20 | 60724121 | 60724344 | E073 | -24839 |
chr20 | 60724352 | 60725622 | E073 | -23561 |
chr20 | 60731596 | 60731799 | E073 | -17384 |
chr20 | 60731829 | 60732463 | E073 | -16720 |
chr20 | 60732520 | 60732570 | E073 | -16613 |
chr20 | 60734707 | 60734862 | E073 | -14321 |
chr20 | 60735047 | 60735255 | E073 | -13928 |
chr20 | 60759554 | 60759672 | E073 | 10371 |
chr20 | 60759772 | 60759826 | E073 | 10589 |
chr20 | 60783752 | 60783802 | E073 | 34569 |
chr20 | 60783823 | 60783971 | E073 | 34640 |
chr20 | 60699508 | 60699722 | E074 | -49461 |
chr20 | 60709050 | 60709425 | E074 | -39758 |
chr20 | 60709445 | 60709671 | E074 | -39512 |
chr20 | 60709743 | 60709839 | E074 | -39344 |
chr20 | 60709853 | 60710267 | E074 | -38916 |
chr20 | 60716099 | 60716159 | E074 | -33024 |
chr20 | 60716203 | 60716340 | E074 | -32843 |
chr20 | 60720701 | 60720751 | E074 | -28432 |
chr20 | 60720756 | 60720865 | E074 | -28318 |
chr20 | 60724352 | 60725622 | E074 | -23561 |
chr20 | 60759554 | 60759672 | E074 | 10371 |
chr20 | 60759772 | 60759826 | E074 | 10589 |
chr20 | 60699508 | 60699722 | E081 | -49461 |
chr20 | 60699843 | 60699932 | E081 | -49251 |
chr20 | 60699969 | 60700019 | E081 | -49164 |
chr20 | 60700310 | 60700390 | E081 | -48793 |
chr20 | 60716099 | 60716159 | E081 | -33024 |
chr20 | 60716203 | 60716340 | E081 | -32843 |
chr20 | 60721140 | 60721640 | E081 | -27543 |
chr20 | 60721738 | 60721788 | E081 | -27395 |
chr20 | 60721950 | 60722004 | E081 | -27179 |
chr20 | 60722813 | 60722871 | E081 | -26312 |
chr20 | 60722876 | 60722952 | E081 | -26231 |
chr20 | 60722955 | 60723005 | E081 | -26178 |
chr20 | 60723031 | 60723085 | E081 | -26098 |
chr20 | 60723196 | 60723246 | E081 | -25937 |
chr20 | 60731241 | 60731537 | E081 | -17646 |
chr20 | 60731596 | 60731799 | E081 | -17384 |
chr20 | 60759554 | 60759672 | E081 | 10371 |
chr20 | 60759772 | 60759826 | E081 | 10589 |
chr20 | 60699843 | 60699932 | E082 | -49251 |
chr20 | 60699969 | 60700019 | E082 | -49164 |
chr20 | 60700310 | 60700390 | E082 | -48793 |
chr20 | 60722142 | 60722256 | E082 | -26927 |
chr20 | 60722328 | 60722465 | E082 | -26718 |
chr20 | 60722724 | 60722768 | E082 | -26415 |
chr20 | 60722813 | 60722871 | E082 | -26312 |
chr20 | 60722876 | 60722952 | E082 | -26231 |
chr20 | 60722955 | 60723005 | E082 | -26178 |
chr20 | 60723031 | 60723085 | E082 | -26098 |
chr20 | 60723196 | 60723246 | E082 | -25937 |
chr20 | 60723827 | 60723979 | E082 | -25204 |
chr20 | 60724121 | 60724344 | E082 | -24839 |
chr20 | 60724352 | 60725622 | E082 | -23561 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr20 | 60716403 | 60720289 | E067 | -28894 |
chr20 | 60756773 | 60758877 | E067 | 7590 |
chr20 | 60716403 | 60720289 | E068 | -28894 |
chr20 | 60756773 | 60758877 | E068 | 7590 |
chr20 | 60793788 | 60795098 | E068 | 44605 |
chr20 | 60716403 | 60720289 | E069 | -28894 |
chr20 | 60756773 | 60758877 | E069 | 7590 |
chr20 | 60793788 | 60795098 | E069 | 44605 |
chr20 | 60716403 | 60720289 | E070 | -28894 |
chr20 | 60756773 | 60758877 | E070 | 7590 |
chr20 | 60716403 | 60720289 | E071 | -28894 |
chr20 | 60756773 | 60758877 | E071 | 7590 |
chr20 | 60716403 | 60720289 | E072 | -28894 |
chr20 | 60756773 | 60758877 | E072 | 7590 |
chr20 | 60793788 | 60795098 | E072 | 44605 |
chr20 | 60716403 | 60720289 | E073 | -28894 |
chr20 | 60756773 | 60758877 | E073 | 7590 |
chr20 | 60716403 | 60720289 | E074 | -28894 |
chr20 | 60756773 | 60758877 | E074 | 7590 |
chr20 | 60716403 | 60720289 | E082 | -28894 |
chr20 | 60756773 | 60758877 | E082 | 7590 |
chr20 | 60793788 | 60795098 | E082 | 44605 |