rs62191099

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0197 (5879/29846,GnomAD)
A=0196 (5729/29118,TOPMED)
A=0123 (614/5008,1000G)
A=0293 (1131/3854,ALSPAC)
A=0284 (1053/3708,TWINSUK)
chr2:238936057 (GRCh38.p7) (2q37.3)
AD
GWASCatalog
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.238936057G>A
GRCh37.p13 chr 2NC_000002.11:g.239857753G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.940A=0.060
1000GenomesAmericanSub694G=0.860A=0.140
1000GenomesEast AsianSub1008G=0.949A=0.051
1000GenomesEuropeSub1006G=0.738A=0.262
1000GenomesGlobalStudy-wide5008G=0.877A=0.123
1000GenomesSouth AsianSub978G=0.870A=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.707A=0.293
The Genome Aggregation DatabaseAfricanSub8704G=0.915A=0.085
The Genome Aggregation DatabaseAmericanSub838G=0.870A=0.130
The Genome Aggregation DatabaseEast AsianSub1618G=0.922A=0.078
The Genome Aggregation DatabaseEuropeSub18386G=0.737A=0.262
The Genome Aggregation DatabaseGlobalStudy-wide29846G=0.803A=0.197
The Genome Aggregation DatabaseOtherSub300G=0.740A=0.260
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.803A=0.196
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.716A=0.284
PMID Title Author Journal
26365420The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.Mbarek HAm J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs621910995E-06alcohol dependence26365420

eQTL of rs62191099 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs62191099 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr2239846702239846904E067-10849
chr2239850221239850315E067-7438
chr2239850614239850658E067-7095
chr2239850801239850845E067-6908
chr2239850883239850927E067-6826
chr2239850973239851700E067-6053
chr2239892148239892480E06734395
chr2239893161239893240E06735408
chr2239846702239846904E068-10849
chr2239850221239850315E068-7438
chr2239850614239850658E068-7095
chr2239850801239850845E068-6908
chr2239850883239850927E068-6826
chr2239850973239851700E068-6053
chr2239851931239852025E068-5728
chr2239846702239846904E069-10849
chr2239850221239850315E069-7438
chr2239850614239850658E069-7095
chr2239850801239850845E069-6908
chr2239850883239850927E069-6826
chr2239850973239851700E069-6053
chr2239851931239852025E069-5728
chr2239873977239874593E06916224
chr2239895799239896026E06938046
chr2239896185239896712E06938432
chr2239846387239846431E070-11322
chr2239846702239846904E070-10849
chr2239847935239848009E070-9744
chr2239848057239848153E070-9600
chr2239850973239851700E070-6053
chr2239846702239846904E071-10849
chr2239850221239850315E071-7438
chr2239850614239850658E071-7095
chr2239850801239850845E071-6908
chr2239850883239850927E071-6826
chr2239850973239851700E071-6053
chr2239873977239874593E07116224
chr2239893161239893240E07135408
chr2239895799239896026E07138046
chr2239896185239896712E07138432
chr2239846702239846904E072-10849
chr2239847935239848009E072-9744
chr2239850221239850315E072-7438
chr2239850614239850658E072-7095
chr2239850801239850845E072-6908
chr2239850883239850927E072-6826
chr2239850973239851700E072-6053
chr2239851931239852025E072-5728
chr2239873977239874593E07216224
chr2239892148239892480E07234395
chr2239893161239893240E07235408
chr2239896185239896712E07238432
chr2239850801239850845E073-6908
chr2239850883239850927E073-6826
chr2239850973239851700E073-6053
chr2239895142239895347E07337389
chr2239896185239896712E07338432
chr2239846702239846904E074-10849
chr2239850221239850315E074-7438
chr2239850614239850658E074-7095
chr2239850801239850845E074-6908
chr2239850883239850927E074-6826
chr2239850973239851700E074-6053
chr2239873977239874593E07416224
chr2239895799239896026E07438046
chr2239896185239896712E07438432
chr2239850801239850845E081-6908
chr2239850883239850927E081-6826
chr2239846702239846904E082-10849
chr2239847935239848009E082-9744
chr2239848057239848153E082-9600
chr2239850973239851700E082-6053