SNP Detail Info-rs633687

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0221 (6641/29924,GnomAD)
G==0214 (6234/29118,TOPMED)
G==0174 (873/5008,1000G)
G==0243 (937/3854,ALSPAC)
G==0249 (925/3708,TWINSUK)

Position: chr11:88202856 (GRCh38.p7) (11q14.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 6 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 11	NC_000011.10:g.88202856G>A
GRCh37.p13 chr 11	NC_000011.9:g.87936024G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.097	A=0.903
1000Genomes	American	Sub	694	G=0.240	A=0.760
1000Genomes	East Asian	Sub	1008	G=0.143	A=0.857
1000Genomes	Europe	Sub	1006	G=0.256	A=0.744
1000Genomes	Global	Study-wide	5008	G=0.174	A=0.826
1000Genomes	South Asian	Sub	978	G=0.180	A=0.820
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.243	A=0.757
The Genome Aggregation Database	African	Sub	8718	G=0.121	A=0.879
The Genome Aggregation Database	American	Sub	832	G=0.270	A=0.730
The Genome Aggregation Database	East Asian	Sub	1604	G=0.124	A=0.876
The Genome Aggregation Database	Europe	Sub	18468	G=0.275	A=0.724
The Genome Aggregation Database	Global	Study-wide	29924	G=0.221	A=0.778
The Genome Aggregation Database	Other	Sub	302	G=0.240	A=0.760
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.214	A=0.785
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.249	A=0.751

PMID	Title	Author	Journal
21703634	A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence.	Wang KS	J Psychiatr Res

SNP ID	p-value	Traits	Study
rs633687	6.44E-05	alcohol dependence	21703634

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr11	87907549	87909350	E067	-26674
chr11	87907549	87909350	E068	-26674
chr11	87907549	87909350	E069	-26674
chr11	87907549	87909350	E070	-26674
chr11	87907549	87909350	E071	-26674
chr11	87907549	87909350	E082	-26674

rs633687