SNP Detail Info-rs6420783

Organism: Homo sapiens

Alleles: C>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0282 (8443/29938,GnomAD)
A=0277 (8092/29118,TOPMED)
A=0259 (1297/5008,1000G)

Position: chr6:148631952 (GRCh38.p7) (6q25.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 6	NC_000006.12:g.148631952C>A
GRCh37.p13 chr 6	NC_000006.11:g.148953088C>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.808	A=0.192
1000Genomes	American	Sub	694	C=0.680	A=0.320
1000Genomes	East Asian	Sub	1008	C=0.675	A=0.325
1000Genomes	Europe	Sub	1006	C=0.705	A=0.295
1000Genomes	Global	Study-wide	5008	C=0.741	A=0.259
1000Genomes	South Asian	Sub	978	C=0.800	A=0.200
The Genome Aggregation Database	African	Sub	8726	C=0.791	A=0.209
The Genome Aggregation Database	American	Sub	834	C=0.660	A=0.340
The Genome Aggregation Database	East Asian	Sub	1614	C=0.685	A=0.315
The Genome Aggregation Database	Europe	Sub	18462	C=0.690	A=0.309
The Genome Aggregation Database	Global	Study-wide	29938	C=0.718	A=0.282
The Genome Aggregation Database	Other	Sub	302	C=0.620	A=0.380
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.722	A=0.277

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs6420783	0.00031	Alcohol dependence (early age of onset)	20201924
rs6420783	0.00099	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs6420783