rs6420783

Homo sapiens
C>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0282 (8443/29938,GnomAD)
A=0277 (8092/29118,TOPMED)
A=0259 (1297/5008,1000G)
chr6:148631952 (GRCh38.p7) (6q25.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.148631952C>A
GRCh37.p13 chr 6NC_000006.11:g.148953088C>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.808A=0.192
1000GenomesAmericanSub694C=0.680A=0.320
1000GenomesEast AsianSub1008C=0.675A=0.325
1000GenomesEuropeSub1006C=0.705A=0.295
1000GenomesGlobalStudy-wide5008C=0.741A=0.259
1000GenomesSouth AsianSub978C=0.800A=0.200
The Genome Aggregation DatabaseAfricanSub8726C=0.791A=0.209
The Genome Aggregation DatabaseAmericanSub834C=0.660A=0.340
The Genome Aggregation DatabaseEast AsianSub1614C=0.685A=0.315
The Genome Aggregation DatabaseEuropeSub18462C=0.690A=0.309
The Genome Aggregation DatabaseGlobalStudy-wide29938C=0.718A=0.282
The Genome Aggregation DatabaseOtherSub302C=0.620A=0.380
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.722A=0.277
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs64207830.00031Alcohol dependence (early age of onset)20201924
rs64207830.00099alcohol dependence20201924

eQTL of rs6420783 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6420783 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.