rs642899

Homo sapiens
T>G
STARD13 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0247 (28157/113632,ExAC)
G=0232 (6943/29900,GnomAD)
G=0203 (5916/29116,TOPMED)
T==0213 (2772/13006,GO-ESP)
G=0232 (1160/5008,1000G)
G=0226 (871/3854,ALSPAC)
G=0224 (832/3708,TWINSUK)
chr13:33106717 (GRCh38.p7) (13q13.1)
AD
GWASCatalog
1   publication(s)
See rs on genome
166 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.33106717T>G
GRCh37.p13 chr 13NC_000013.10:g.33680854T>G
STARD13 RefSeqGeneNG_029752.2:g.575119A>C

Gene: STARD13, StAR related lipid transfer domain containing 13(minus strand)

Molecule type Change Amino acid[Codon] SO Term
STARD13 transcript variant 4NM_001243476.2:c.N/AIntron Variant
STARD13 transcript variant 3NM_052851.2:c.N/AIntron Variant
STARD13 transcript variant 1NM_178006.3:c.N/AIntron Variant
STARD13 transcript variant 2NM_178007.2:c.N/AIntron Variant
STARD13 transcript variant 5NM_001243466.1:c.N/AGenic Downstream Transcript Variant
STARD13 transcript variant 6NM_001243474.1:c.N/AGenic Downstream Transcript Variant
STARD13 transcript variant X2XM_011535299.2:c.N/AIntron Variant
STARD13 transcript variant X1XM_017020834.1:c.N/AIntron Variant
STARD13 transcript variant X3XM_017020835.1:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.823G=0.177
1000GenomesAmericanSub694T=0.700G=0.300
1000GenomesEast AsianSub1008T=0.808G=0.192
1000GenomesEuropeSub1006T=0.786G=0.214
1000GenomesGlobalStudy-wide5008T=0.768G=0.232
1000GenomesSouth AsianSub978T=0.690G=0.310
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.774G=0.226
The Exome Aggregation ConsortiumAmericanSub21800T=0.752G=0.247
The Exome Aggregation ConsortiumAsianSub19676T=0.736G=0.264
The Exome Aggregation ConsortiumEuropeSub71330T=0.757G=0.243
The Exome Aggregation ConsortiumGlobalStudy-wide113632T=0.752G=0.247
The Exome Aggregation ConsortiumOtherSub826T=0.720G=0.280
The Genome Aggregation DatabaseAfricanSub8698T=0.817G=0.183
The Genome Aggregation DatabaseAmericanSub836T=0.720G=0.280
The Genome Aggregation DatabaseEast AsianSub1616T=0.794G=0.206
The Genome Aggregation DatabaseEuropeSub18448T=0.744G=0.256
The Genome Aggregation DatabaseGlobalStudy-wide29900T=0.767G=0.232
The Genome Aggregation DatabaseOtherSub302T=0.790G=0.210
Trans-Omics for Precision MedicineGlobalStudy-wide29116T=0.796G=0.203
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.776G=0.224
PMID Title Author Journal
23942779A genome-wide association study of behavioral disinhibition.McGue MBehav Genet

P-Value

SNP ID p-value Traits Study
rs6428998E-06alcohol dependence23942779

eQTL of rs642899 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs642899 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr133365016533651024E067-29830
chr133368481733686458E0673963
chr133369722033698508E06716366
chr133369859333698649E06717739
chr133369869533698848E06717841
chr133369990033700835E06719046
chr133370324333703293E06722389
chr133370330633703493E06722452
chr133371171933712205E06730865
chr133371226133712356E06731407
chr133371242333712493E06731569
chr133371259733713052E06731743
chr133371308833713246E06732234
chr133371332033714861E06732466
chr133371507333715127E06734219
chr133372435433724728E06743500
chr133364386733644000E068-36854
chr133365016533651024E068-29830
chr133368429633684352E0683442
chr133368445933684639E0683605
chr133368469333684804E0683839
chr133368481733686458E0683963
chr133369722033698508E06816366
chr133369859333698649E06817739
chr133369869533698848E06817841
chr133369886133698952E06818007
chr133369937733699467E06818523
chr133369956733699687E06818713
chr133369990033700835E06819046
chr133370104733701842E06820193
chr133371332033714861E06832466
chr133364652533646655E069-34199
chr133364677433646973E069-33881
chr133365016533651024E069-29830
chr133368469333684804E0693839
chr133368481733686458E0693963
chr133368675833686807E0695904
chr133368687733687353E0696023
chr133368736733687425E0696513
chr133368747633687530E0696622
chr133369670933696749E06915855
chr133369677133696868E06915917
chr133369687633696916E06916022
chr133369722033698508E06916366
chr133369859333698649E06917739
chr133369869533698848E06917841
chr133369886133698952E06918007
chr133369937733699467E06918523
chr133369956733699687E06918713
chr133369990033700835E06919046
chr133370104733701842E06920193
chr133370897533709388E06928121
chr133371308833713246E06932234
chr133371332033714861E06932466
chr133371507333715127E06934219
chr133372403833724338E06943184
chr133372435433724728E06943500
chr133372747033727623E06946616
chr133372764133728531E06946787
chr133372860233728666E06947748
chr133372872833728778E06947874
chr133364923033649639E070-31215
chr133364972133649771E070-31083
chr133365016533651024E070-29830
chr133366639133666946E070-13908
chr133369722033698508E07016366
chr133369859333698649E07017739
chr133369869533698848E07017841
chr133371332033714861E07032466
chr133363129633632012E071-48842
chr133364652533646655E071-34199
chr133364677433646973E071-33881
chr133365016533651024E071-29830
chr133368445933684639E0713605
chr133368469333684804E0713839
chr133368481733686458E0713963
chr133368675833686807E0715904
chr133368687733687353E0716023
chr133368736733687425E0716513
chr133368747633687530E0716622
chr133369722033698508E07116366
chr133369859333698649E07117739
chr133369869533698848E07117841
chr133369937733699467E07118523
chr133369956733699687E07118713
chr133369990033700835E07119046
chr133370104733701842E07120193
chr133370324333703293E07122389
chr133370330633703493E07122452
chr133371308833713246E07132234
chr133371332033714861E07132466
chr133371665633716696E07135802
chr133372403833724338E07143184
chr133372435433724728E07143500
chr133372747033727623E07146616
chr133372764133728531E07146787
chr133372860233728666E07147748
chr133372872833728778E07147874
chr133372882433729109E07147970
chr133372916233729241E07148308
chr133372929533729428E07148441
chr133364677433646973E072-33881
chr133364722133647360E072-33494
chr133364738933647452E072-33402
chr133365016533651024E072-29830
chr133368445933684639E0723605
chr133368469333684804E0723839
chr133368481733686458E0723963
chr133369990033700835E07219046
chr133370104733701842E07220193
chr133371308833713246E07232234
chr133371332033714861E07232466
chr133372435433724728E07243500
chr133368469333684804E0733839
chr133368481733686458E0733963
chr133369722033698508E07316366
chr133369990033700835E07319046
chr133370431133704361E07323457
chr133371242333712493E07331569
chr133371259733713052E07331743
chr133371308833713246E07332234
chr133371332033714861E07332466
chr133372435433724728E07343500
chr133372728033727347E07346426
chr133372747033727623E07346616
chr133372764133728531E07346787
chr133372860233728666E07347748
chr133372872833728778E07347874
chr133372882433729109E07347970
chr133372916233729241E07348308
chr133364652533646655E074-34199
chr133364677433646973E074-33881
chr133364722133647360E074-33494
chr133364738933647452E074-33402
chr133364752033647743E074-33111
chr133365016533651024E074-29830
chr133368429633684352E0743442
chr133368445933684639E0743605
chr133368469333684804E0743839
chr133368481733686458E0743963
chr133368675833686807E0745904
chr133368687733687353E0746023
chr133368736733687425E0746513
chr133368747633687530E0746622
chr133368764233687686E0746788
chr133369433133694616E07413477
chr133369474933694883E07413895
chr133369722033698508E07416366
chr133369990033700835E07419046
chr133370104733701842E07420193
chr133370187333702024E07421019
chr133370248233702543E07421628
chr133370324333703293E07422389
chr133370330633703493E07422452
chr133370355633703611E07422702
chr133371308833713246E07432234
chr133371332033714861E07432466
chr133372403833724338E07443184
chr133372435433724728E07443500
chr133372504333725129E07444189
chr133372728033727347E07446426
chr133372747033727623E07446616
chr133369722033698508E08116366
chr133369722033698508E08216366
chr133369859333698649E08217739
chr133369869533698848E08217841