rs6439772

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
A==0277 (8293/29942,GnomAD)
A==0311 (9070/29118,TOPMED)
A==0307 (1539/5008,1000G)
A==0220 (847/3854,ALSPAC)
A==0227 (841/3708,TWINSUK)
chr3:137962606 (GRCh38.p7) (3q22.3)
AD
GWASdb2
1   publication(s)
See rs on genome
1 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.137962606A>G
GRCh37.p13 chr 3NC_000003.11:g.137681448A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.406G=0.594
1000GenomesAmericanSub694A=0.350G=0.650
1000GenomesEast AsianSub1008A=0.293G=0.707
1000GenomesEuropeSub1006A=0.237G=0.763
1000GenomesGlobalStudy-wide5008A=0.307G=0.693
1000GenomesSouth AsianSub978A=0.230G=0.770
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.220G=0.780
The Genome Aggregation DatabaseAfricanSub8718A=0.377G=0.623
The Genome Aggregation DatabaseAmericanSub836A=0.360G=0.640
The Genome Aggregation DatabaseEast AsianSub1614A=0.291G=0.709
The Genome Aggregation DatabaseEuropeSub18472A=0.226G=0.774
The Genome Aggregation DatabaseGlobalStudy-wide29942A=0.277G=0.723
The Genome Aggregation DatabaseOtherSub302A=0.220G=0.780
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.311G=0.688
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.227G=0.773
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs64397720.000426alcohol dependence21314694

eQTL of rs6439772 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6439772 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3137680971137681233E070-215