rs6443038

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
G==0277 (8287/29890,GnomAD)
G==0283 (8240/29118,TOPMED)
G==0338 (1695/5008,1000G)
G==0274 (1057/3854,ALSPAC)
G==0260 (963/3708,TWINSUK)
chr3:91729 (GRCh38.p7) (3p26.3)
AD
GWASdb2
1   publication(s)
See rs on genome
111 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.91729G>A
GRCh37.p13 chr 3NC_000003.11:g.133412G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.256A=0.744
1000GenomesAmericanSub694G=0.280A=0.720
1000GenomesEast AsianSub1008G=0.421A=0.579
1000GenomesEuropeSub1006G=0.257A=0.743
1000GenomesGlobalStudy-wide5008G=0.338A=0.662
1000GenomesSouth AsianSub978G=0.490A=0.510
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.274A=0.726
The Genome Aggregation DatabaseAfricanSub8722G=0.282A=0.718
The Genome Aggregation DatabaseAmericanSub834G=0.300A=0.700
The Genome Aggregation DatabaseEast AsianSub1602G=0.440A=0.560
The Genome Aggregation DatabaseEuropeSub18430G=0.259A=0.740
The Genome Aggregation DatabaseGlobalStudy-wide29890G=0.277A=0.722
The Genome Aggregation DatabaseOtherSub302G=0.300A=0.700
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.283A=0.717
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.260A=0.740
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs64430380.00021alcohol dependence20201924

eQTL of rs6443038 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6443038 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3104810105451E067-27961
chr3114174114280E067-19132
chr3114437114799E067-18613
chr3141018141128E0677606
chr3114174114280E068-19132
chr3114437114799E068-18613
chr3114802115003E068-18409
chr3115137115254E068-18158
chr3115361115440E068-17972
chr3139390139586E0685978
chr3139704139834E0686292
chr3141018141128E0687606
chr3141277141526E0687865
chr3104810105451E069-27961
chr3105525105633E069-27779
chr3114174114280E069-19132
chr3114437114799E069-18613
chr3114802115003E069-18409
chr3115137115254E069-18158
chr3115361115440E069-17972
chr3141018141128E0697606
chr3114174114280E070-19132
chr3114437114799E070-18613
chr3114802115003E070-18409
chr3115137115254E070-18158
chr3115361115440E070-17972
chr3116283116363E070-17049
chr3116414116901E070-16511
chr3117032117204E070-16208
chr3117319117416E070-15996
chr3117466117544E070-15868
chr3123630123786E070-9626
chr3123847123912E070-9500
chr3124839125153E070-8259
chr3139183139333E0705771
chr3139390139586E0705978
chr3139704139834E0706292
chr3142138142206E0708726
chr3144310144411E07010898
chr3145812145986E07012400
chr3152159152209E07018747
chr3152592152664E07019180
chr3152974153132E07019562
chr3153343153416E07019931
chr3173051173150E07039639
chr3173301173444E07039889
chr3104810105451E071-27961
chr3105525105633E071-27779
chr3114174114280E071-19132
chr3114437114799E071-18613
chr3114802115003E071-18409
chr3115137115254E071-18158
chr3141018141128E0717606
chr3141277141526E0717865
chr3105525105633E072-27779
chr3114174114280E072-19132
chr3114437114799E072-18613
chr3114802115003E072-18409
chr3115137115254E072-18158
chr3115361115440E072-17972
chr3141018141128E0727606
chr3141018141128E0737606
chr3141277141526E0737865
chr3142138142206E0738726
chr3111467111643E074-21769
chr3114437114799E074-18613
chr3114802115003E074-18409
chr3115137115254E074-18158
chr3115361115440E074-17972
chr3141018141128E0747606
chr3141277141526E0747865
chr38431584369E081-49043
chr38610586168E081-47244
chr3104810105451E081-27961
chr3105525105633E081-27779
chr3114437114799E081-18613
chr3114802115003E081-18409
chr3115137115254E081-18158
chr3115361115440E081-17972
chr3123630123786E081-9626
chr3139183139333E0815771
chr3139390139586E0815978
chr3139704139834E0816292
chr3141018141128E0817606
chr3141277141526E0817865
chr3164584164709E08131172
chr3173051173150E08139639
chr3173301173444E08139889
chr38431584369E082-49043
chr3104810105451E082-27961
chr3105525105633E082-27779
chr3114437114799E082-18613
chr3114802115003E082-18409
chr3115137115254E082-18158
chr3115361115440E082-17972
chr3117032117204E082-16208
chr3117319117416E082-15996
chr3117466117544E082-15868
chr3139183139333E0825771
chr3139390139586E0825978
chr3139704139834E0826292
chr3141018141128E0827606
chr3141277141526E0827865
chr3142138142206E0828726
chr3152974153132E08219562
chr3153343153416E08219931
chr3164433164483E08231021
chr3164584164709E08231172
chr3173051173150E08239639
chr3173301173444E08239889
chr3182518182753E08249106