SNP Detail Info-rs6476383

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A==0079 (2388/29966,GnomAD)
A==0104 (3028/29118,TOPMED)
A==0093 (465/5008,1000G)
A==0019 (73/3854,ALSPAC)
A==0020 (73/3708,TWINSUK)

Position: chr9:32865571 (GRCh38.p7) (9p21.1)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 12 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 9	NC_000009.12:g.32865571A>G
GRCh37.p13 chr 9	NC_000009.11:g.32865569A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.256	G=0.744
1000Genomes	American	Sub	694	A=0.040	G=0.960
1000Genomes	East Asian	Sub	1008	A=0.000	G=1.000
1000Genomes	Europe	Sub	1006	A=0.027	G=0.973
1000Genomes	Global	Study-wide	5008	A=0.093	G=0.907
1000Genomes	South Asian	Sub	978	A=0.070	G=0.930
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.019	G=0.981
The Genome Aggregation Database	African	Sub	8708	A=0.216	G=0.784
The Genome Aggregation Database	American	Sub	838	A=0.030	G=0.970
The Genome Aggregation Database	East Asian	Sub	1622	A=0.002	G=0.998
The Genome Aggregation Database	Europe	Sub	18496	A=0.025	G=0.974
The Genome Aggregation Database	Global	Study-wide	29966	A=0.079	G=0.920
The Genome Aggregation Database	Other	Sub	302	A=0.020	G=0.980
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.104	G=0.896
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.020	G=0.980

PMID	Title	Author	Journal
20158304	A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.	Lind PA	Twin Res Hum Genet

SNP ID	p-value	Traits	Study
rs6476383	5.68E-06	alcohol and nictotine co-dependence	20158304

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr9	32863359	32863675	E071	-1894

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr9	32881881	32882003	E067	16312
chr9	32882137	32882187	E067	16568
chr9	32881881	32882003	E068	16312
chr9	32882137	32882187	E068	16568
chr9	32881881	32882003	E069	16312
chr9	32882137	32882187	E069	16568
chr9	32881881	32882003	E071	16312
chr9	32882137	32882187	E071	16568
chr9	32881881	32882003	E072	16312
chr9	32882137	32882187	E072	16568
chr9	32881881	32882003	E074	16312
chr9	32882137	32882187	E074	16568

rs6476383