rs6479671

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0094 (2823/29968,GnomAD)
A=0135 (3934/29118,TOPMED)
A=0130 (650/5008,1000G)
A=0013 (49/3854,ALSPAC)
A=0016 (58/3708,TWINSUK)
chr10:59938119 (GRCh38.p7) (10q21.2)
AD
GWASdb2
1   publication(s)
See rs on genome
219 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.59938119G>A
GRCh37.p13 chr 10NC_000010.10:g.61697877G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.669A=0.331
1000GenomesAmericanSub694G=0.980A=0.020
1000GenomesEast AsianSub1008G=0.906A=0.094
1000GenomesEuropeSub1006G=0.985A=0.015
1000GenomesGlobalStudy-wide5008G=0.870A=0.130
1000GenomesSouth AsianSub978G=0.910A=0.090
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.987A=0.013
The Genome Aggregation DatabaseAfricanSub8708G=0.724A=0.276
The Genome Aggregation DatabaseAmericanSub836G=0.970A=0.030
The Genome Aggregation DatabaseEast AsianSub1622G=0.941A=0.059
The Genome Aggregation DatabaseEuropeSub18500G=0.983A=0.016
The Genome Aggregation DatabaseGlobalStudy-wide29968G=0.905A=0.094
The Genome Aggregation DatabaseOtherSub302G=0.990A=0.010
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.864A=0.135
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.984A=0.016
PMID Title Author Journal
24376456Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.Simino JFront Genet

P-Value

SNP ID p-value Traits Study
rs64796711.35E-11alcohol consumptionpha001398

eQTL of rs6479671 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6479671 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr106165121961651359E067-46518
chr106165142361651513E067-46364
chr106165173161652029E067-45848
chr106165216861652244E067-45633
chr106165312161653319E067-44558
chr106165332261653372E067-44505
chr106165367661653741E067-44136
chr106165378261653868E067-44009
chr106165390561654292E067-43585
chr106165429461654380E067-43497
chr106165458861654652E067-43225
chr106165479461654846E067-43031
chr106165499161655041E067-42836
chr106165512361655185E067-42692
chr106165525761655354E067-42523
chr106165545161655864E067-42013
chr106165607161656224E067-41653
chr106166344161663667E067-34210
chr106172264461722820E06724767
chr106172286561722956E06724988
chr106164876561648809E068-49068
chr106164884661649042E068-48835
chr106164905261649146E068-48731
chr106164928661649336E068-48541
chr106164936661649416E068-48461
chr106164959161649651E068-48226
chr106165121961651359E068-46518
chr106165142361651513E068-46364
chr106165173161652029E068-45848
chr106165216861652244E068-45633
chr106165260861652731E068-45146
chr106165275061652800E068-45077
chr106165295561653038E068-44839
chr106165312161653319E068-44558
chr106165332261653372E068-44505
chr106165367661653741E068-44136
chr106165378261653868E068-44009
chr106165390561654292E068-43585
chr106165429461654380E068-43497
chr106165458861654652E068-43225
chr106165479461654846E068-43031
chr106165499161655041E068-42836
chr106165512361655185E068-42692
chr106165525761655354E068-42523
chr106165545161655864E068-42013
chr106165607161656224E068-41653
chr106165788961657933E068-39944
chr106165818461658283E068-39594
chr106165828761658469E068-39408
chr106165860961658883E068-38994
chr106165911061659234E068-38643
chr106165925961659344E068-38533
chr106165939561659489E068-38388
chr106165956861659631E068-38246
chr106165963961659744E068-38133
chr106172264461722820E06824767
chr106172286561722956E06824988
chr106165121961651359E069-46518
chr106165142361651513E069-46364
chr106165173161652029E069-45848
chr106165216861652244E069-45633
chr106165260861652731E069-45146
chr106165275061652800E069-45077
chr106165367661653741E069-44136
chr106165378261653868E069-44009
chr106165390561654292E069-43585
chr106165429461654380E069-43497
chr106165458861654652E069-43225
chr106165479461654846E069-43031
chr106165499161655041E069-42836
chr106165512361655185E069-42692
chr106165525761655354E069-42523
chr106165545161655864E069-42013
chr106165607161656224E069-41653
chr106165645161656491E069-41386
chr106165660861656658E069-41219
chr106165681361656872E069-41005
chr106165688061656973E069-40904
chr106165745061657500E069-40377
chr106172264461722820E06924767
chr106172286561722956E06924988
chr106165121961651359E070-46518
chr106165142361651513E070-46364
chr106165367661653741E070-44136
chr106165378261653868E070-44009
chr106165390561654292E070-43585
chr106165429461654380E070-43497
chr106165458861654652E070-43225
chr106165479461654846E070-43031
chr106165545161655864E070-42013
chr106165607161656224E070-41653
chr106165818461658283E070-39594
chr106165828761658469E070-39408
chr106165860961658883E070-38994
chr106165911061659234E070-38643
chr106165925961659344E070-38533
chr106165939561659489E070-38388
chr106165956861659631E070-38246
chr106166344161663667E070-34210
chr106166368061663832E070-34045
chr106165121961651359E071-46518
chr106165142361651513E071-46364
chr106165173161652029E071-45848
chr106165216861652244E071-45633
chr106165260861652731E071-45146
chr106165275061652800E071-45077
chr106165295561653038E071-44839
chr106165312161653319E071-44558
chr106165332261653372E071-44505
chr106165367661653741E071-44136
chr106165378261653868E071-44009
chr106165390561654292E071-43585
chr106165429461654380E071-43497
chr106165458861654652E071-43225
chr106165479461654846E071-43031
chr106165499161655041E071-42836
chr106165512361655185E071-42692
chr106165525761655354E071-42523
chr106165545161655864E071-42013
chr106165607161656224E071-41653
chr106165788961657933E071-39944
chr106165818461658283E071-39594
chr106165828761658469E071-39408
chr106165860961658883E071-38994
chr106165911061659234E071-38643
chr106165925961659344E071-38533
chr106166176861662136E071-35741
chr106166368061663832E071-34045
chr106172264461722820E07124767
chr106172286561722956E07124988
chr106164810861648477E072-49400
chr106164905261649146E072-48731
chr106165367661653741E072-44136
chr106165378261653868E072-44009
chr106165390561654292E072-43585
chr106165429461654380E072-43497
chr106165458861654652E072-43225
chr106165479461654846E072-43031
chr106165499161655041E072-42836
chr106165512361655185E072-42692
chr106165525761655354E072-42523
chr106165545161655864E072-42013
chr106165607161656224E072-41653
chr106166176861662136E072-35741
chr106166301861663096E072-34781
chr106166344161663667E072-34210
chr106164810861648477E073-49400
chr106164862961648679E073-49198
chr106164876561648809E073-49068
chr106164884661649042E073-48835
chr106164905261649146E073-48731
chr106164928661649336E073-48541
chr106164936661649416E073-48461
chr106164959161649651E073-48226
chr106165142361651513E073-46364
chr106165173161652029E073-45848
chr106165260861652731E073-45146
chr106165275061652800E073-45077
chr106165367661653741E073-44136
chr106165378261653868E073-44009
chr106165390561654292E073-43585
chr106165429461654380E073-43497
chr106165458861654652E073-43225
chr106165479461654846E073-43031
chr106165499161655041E073-42836
chr106165512361655185E073-42692
chr106165525761655354E073-42523
chr106165545161655864E073-42013
chr106165607161656224E073-41653
chr106166118261661690E073-36187
chr106166176861662136E073-35741
chr106166344161663667E073-34210
chr106166368061663832E073-34045
chr106165121961651359E074-46518
chr106165142361651513E074-46364
chr106165173161652029E074-45848
chr106165216861652244E074-45633
chr106165260861652731E074-45146
chr106165275061652800E074-45077
chr106165295561653038E074-44839
chr106165312161653319E074-44558
chr106165332261653372E074-44505
chr106165367661653741E074-44136
chr106165378261653868E074-44009
chr106165390561654292E074-43585
chr106165429461654380E074-43497
chr106165458861654652E074-43225
chr106165479461654846E074-43031
chr106165499161655041E074-42836
chr106165512361655185E074-42692
chr106165525761655354E074-42523
chr106165545161655864E074-42013
chr106165607161656224E074-41653
chr106166301861663096E074-34781
chr106166344161663667E074-34210
chr106172264461722820E07424767
chr106172286561722956E07424988
chr106165939561659489E081-38388
chr106165956861659631E081-38246
chr106165963961659744E081-38133
chr106164810861648477E082-49400
chr106164862961648679E082-49198
chr106164876561648809E082-49068
chr106164884661649042E082-48835
chr106164905261649146E082-48731
chr106165367661653741E082-44136
chr106165378261653868E082-44009
chr106165390561654292E082-43585
chr106165429461654380E082-43497
chr106165458861654652E082-43225
chr106165479461654846E082-43031
chr106165818461658283E082-39594
chr106165828761658469E082-39408
chr106165860961658883E082-38994
chr106165911061659234E082-38643
chr106165925961659344E082-38533
chr106165939561659489E082-38388
chr106166344161663667E082-34210
chr106166368061663832E082-34045










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr106166431861668846E067-29031
chr106166431861668846E068-29031
chr106166431861668846E069-29031
chr106166431861668846E070-29031
chr106166431861668846E071-29031
chr106166431861668846E072-29031
chr106166431861668846E073-29031
chr106166431861668846E074-29031
chr106166431861668846E081-29031
chr106166431861668846E082-29031