rs6482428

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0195 (5750/29480,GnomAD)
T==0174 (5070/29118,TOPMED)
T==0127 (638/5008,1000G)
chr10:24740234 (GRCh38.p7) (10p12.1)
AD
GWASCatalog
1   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.24740234T>C
GRCh37.p13 chr 10NC_000010.10:g.25029163T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.033C=0.967
1000GenomesAmericanSub694T=0.170C=0.830
1000GenomesEast AsianSub1008T=0.032C=0.968
1000GenomesEuropeSub1006T=0.312C=0.688
1000GenomesGlobalStudy-wide5008T=0.127C=0.873
1000GenomesSouth AsianSub978T=0.140C=0.860
The Genome Aggregation DatabaseAfricanSub8638T=0.072C=0.928
The Genome Aggregation DatabaseAmericanSub836T=0.150C=0.850
The Genome Aggregation DatabaseEast AsianSub1612T=0.031C=0.969
The Genome Aggregation DatabaseEuropeSub18094T=0.269C=0.730
The Genome Aggregation DatabaseGlobalStudy-wide29480T=0.195C=0.805
The Genome Aggregation DatabaseOtherSub300T=0.280C=0.720
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.174C=0.825
PMID Title Author Journal
29460428Genomewide Association Study of Alcohol Dependence and Related Traits in a Thai Population.Gelernter JAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs64824281E-07alcohol dependence29460428

eQTL of rs6482428 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6482428 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr102497993224980073E067-49090
chr102498014924980346E067-48817
chr102498045324980493E067-48670
chr102498311824983320E067-45843
chr102498443124984742E067-44421
chr102498478524984839E067-44324
chr102498508024985160E067-44003
chr102498535124985527E067-43636
chr102498561424985676E067-43487
chr102498581124985861E067-43302
chr102498588724985986E067-43177
chr102498602024986080E067-43083
chr102498633424986384E067-42779
chr102498752224987680E067-41483
chr102498775224987815E067-41348
chr102498789024988104E067-41059
chr102498852424988583E067-40580
chr102498861924988783E067-40380
chr102498880924989062E067-40101
chr102498908024989319E067-39844
chr102499045224990695E067-38468
chr102499070224990961E067-38202
chr102499165924991763E067-37400
chr102499202224992126E067-37037
chr102499226724992307E067-36856
chr102499233524992385E067-36778
chr102499239424992504E067-36659
chr102499269324993147E067-36016
chr102499464824994692E067-34471
chr102499479024994848E067-34315
chr102499489924994992E067-34171
chr102499502024995107E067-34056
chr102499533324996160E067-33003
chr102499622824996286E067-32877
chr102499632124996426E067-32737
chr102499646124996634E067-32529
chr102499672624996806E067-32357
chr102499891324998973E067-30190
chr102499935224999414E067-29749
chr102499944124999528E067-29635
chr102499955924999621E067-29542
chr102500019125000265E067-28898
chr102500037825000428E067-28735
chr102500069025000780E067-28383
chr102500083125000962E067-28201
chr102500119225001242E067-27921
chr102500150425001581E067-27582
chr102500171425001878E067-27285
chr102500199525002127E067-27036
chr102500214025002284E067-26879
chr102500241225002534E067-26629
chr102500261125002665E067-26498
chr102500275725002824E067-26339
chr102500284225002915E067-26248
chr102500298025003177E067-25986
chr102500323025003304E067-25859
chr102500335725003484E067-25679
chr102500626725006330E067-22833
chr102500648225006563E067-22600
chr102507305525073319E06743892
chr102507335725073621E06744194
chr102507369625073746E06744533
chr102507388825074157E06744725
chr102507598125076073E06746818
chr102507818925078301E06749026
chr102507862325078887E06749460
chr102497993224980073E068-49090
chr102498014924980346E068-48817
chr102498045324980493E068-48670
chr102498443124984742E068-44421
chr102498478524984839E068-44324
chr102498508024985160E068-44003
chr102498535124985527E068-43636
chr102498561424985676E068-43487
chr102498581124985861E068-43302
chr102498588724985986E068-43177
chr102498602024986080E068-43083
chr102498729724987494E068-41669
chr102498752224987680E068-41483
chr102498775224987815E068-41348
chr102498789024988104E068-41059
chr102498880924989062E068-40101
chr102498908024989319E068-39844
chr102498973624989992E068-39171
chr102499015024990284E068-38879
chr102499045224990695E068-38468
chr102499070224990961E068-38202
chr102499165924991763E068-37400
chr102499464824994692E068-34471
chr102499479024994848E068-34315
chr102499489924994992E068-34171
chr102499502024995107E068-34056
chr102499622824996286E068-32877
chr102499632124996426E068-32737
chr102499646124996634E068-32529
chr102499672624996806E068-32357
chr102499686924996947E068-32216
chr102499699724997250E068-31913
chr102499872624998776E068-30387
chr102499891324998973E068-30190
chr102499935224999414E068-29749
chr102499944124999528E068-29635
chr102499955924999621E068-29542
chr102500019125000265E068-28898
chr102500037825000428E068-28735
chr102500069025000780E068-28383
chr102500083125000962E068-28201
chr102500119225001242E068-27921
chr102500150425001581E068-27582
chr102500171425001878E068-27285
chr102500199525002127E068-27036
chr102500214025002284E068-26879
chr102500241225002534E068-26629
chr102500261125002665E068-26498
chr102500275725002824E068-26339
chr102500284225002915E068-26248
chr102500298025003177E068-25986
chr102500323025003304E068-25859
chr102500335725003484E068-25679
chr102500580025005916E068-23247
chr102500605225006223E068-22940
chr102500648225006563E068-22600
chr102500657825006677E068-22486
chr102507388825074157E06844725
chr102507598125076073E06846818
chr102507808525078149E06848922
chr102507818925078301E06849026
chr102507862325078887E06849460
chr102497993224980073E069-49090
chr102498014924980346E069-48817
chr102498443124984742E069-44421
chr102498478524984839E069-44324
chr102498508024985160E069-44003
chr102498535124985527E069-43636
chr102498561424985676E069-43487
chr102498581124985861E069-43302
chr102498588724985986E069-43177
chr102498602024986080E069-43083
chr102498633424986384E069-42779
chr102498729724987494E069-41669
chr102498752224987680E069-41483
chr102498775224987815E069-41348
chr102498880924989062E069-40101
chr102498908024989319E069-39844
chr102498973624989992E069-39171
chr102499015024990284E069-38879
chr102499045224990695E069-38468
chr102499070224990961E069-38202
chr102499165924991763E069-37400
chr102499202224992126E069-37037
chr102499226724992307E069-36856
chr102499233524992385E069-36778
chr102499239424992504E069-36659
chr102499464824994692E069-34471
chr102499479024994848E069-34315
chr102499489924994992E069-34171
chr102499502024995107E069-34056
chr102499533324996160E069-33003
chr102499622824996286E069-32877
chr102499632124996426E069-32737
chr102499646124996634E069-32529
chr102499672624996806E069-32357
chr102499686924996947E069-32216
chr102499699724997250E069-31913
chr102499829924998353E069-30810
chr102499840324998466E069-30697
chr102499872624998776E069-30387
chr102499891324998973E069-30190
chr102499935224999414E069-29749
chr102499944124999528E069-29635
chr102499955924999621E069-29542
chr102500019125000265E069-28898
chr102500037825000428E069-28735
chr102500069025000780E069-28383
chr102500083125000962E069-28201
chr102500119225001242E069-27921
chr102500150425001581E069-27582
chr102500171425001878E069-27285
chr102500199525002127E069-27036
chr102500214025002284E069-26879
chr102500241225002534E069-26629
chr102500261125002665E069-26498
chr102500275725002824E069-26339
chr102500284225002915E069-26248
chr102500298025003177E069-25986
chr102500323025003304E069-25859
chr102500335725003484E069-25679
chr102500484925004938E069-24225
chr102501441925014617E069-14546
chr102507305525073319E06943892
chr102507369625073746E06944533
chr102507388825074157E06944725
chr102507818925078301E06949026
chr102507862325078887E06949460
chr102498443124984742E070-44421
chr102498478524984839E070-44324
chr102498508024985160E070-44003
chr102498535124985527E070-43636
chr102498561424985676E070-43487
chr102498581124985861E070-43302
chr102498588724985986E070-43177
chr102498602024986080E070-43083
chr102498633424986384E070-42779
chr102498729724987494E070-41669
chr102498752224987680E070-41483
chr102498775224987815E070-41348
chr102498789024988104E070-41059
chr102498852424988583E070-40580
chr102498861924988783E070-40380
chr102498880924989062E070-40101
chr102498908024989319E070-39844
chr102499489924994992E070-34171
chr102499533324996160E070-33003
chr102499622824996286E070-32877
chr102499632124996426E070-32737
chr102499646124996634E070-32529
chr102499672624996806E070-32357
chr102499686924996947E070-32216
chr102499699724997250E070-31913
chr102499840324998466E070-30697
chr102499872624998776E070-30387
chr102499891324998973E070-30190
chr102499935224999414E070-29749
chr102499944124999528E070-29635
chr102500019125000265E070-28898
chr102500037825000428E070-28735
chr102500069025000780E070-28383
chr102500083125000962E070-28201
chr102500119225001242E070-27921
chr102500150425001581E070-27582
chr102500171425001878E070-27285
chr102500199525002127E070-27036
chr102500298025003177E070-25986
chr102500323025003304E070-25859
chr102500335725003484E070-25679
chr102500484925004938E070-24225
chr102507818925078301E07049026
chr102507862325078887E07049460
chr102497993224980073E071-49090
chr102498014924980346E071-48817
chr102498045324980493E071-48670
chr102498443124984742E071-44421
chr102498478524984839E071-44324
chr102498508024985160E071-44003
chr102498535124985527E071-43636
chr102498561424985676E071-43487
chr102498581124985861E071-43302
chr102498588724985986E071-43177
chr102498602024986080E071-43083
chr102498729724987494E071-41669
chr102498752224987680E071-41483
chr102498775224987815E071-41348
chr102498789024988104E071-41059
chr102498880924989062E071-40101
chr102498908024989319E071-39844
chr102498973624989992E071-39171
chr102499015024990284E071-38879
chr102499045224990695E071-38468
chr102499070224990961E071-38202
chr102499165924991763E071-37400
chr102499202224992126E071-37037
chr102499226724992307E071-36856
chr102499233524992385E071-36778
chr102499239424992504E071-36659
chr102499269324993147E071-36016
chr102499464824994692E071-34471
chr102499479024994848E071-34315
chr102499489924994992E071-34171
chr102499502024995107E071-34056
chr102499533324996160E071-33003
chr102499622824996286E071-32877
chr102499632124996426E071-32737
chr102499646124996634E071-32529
chr102499672624996806E071-32357
chr102499686924996947E071-32216
chr102499699724997250E071-31913
chr102499819624998256E071-30907
chr102499829924998353E071-30810
chr102499840324998466E071-30697
chr102499872624998776E071-30387
chr102499891324998973E071-30190
chr102499935224999414E071-29749
chr102499944124999528E071-29635
chr102499955924999621E071-29542
chr102500019125000265E071-28898
chr102500037825000428E071-28735
chr102500069025000780E071-28383
chr102500083125000962E071-28201
chr102500119225001242E071-27921
chr102500150425001581E071-27582
chr102500171425001878E071-27285
chr102500199525002127E071-27036
chr102500214025002284E071-26879
chr102500241225002534E071-26629
chr102500261125002665E071-26498
chr102500275725002824E071-26339
chr102500284225002915E071-26248
chr102500298025003177E071-25986
chr102500323025003304E071-25859
chr102500335725003484E071-25679
chr102500484925004938E071-24225
chr102500605225006223E071-22940
chr102500626725006330E071-22833
chr102500648225006563E071-22600
chr102504866525048911E07119502
chr102504908925049139E07119926
chr102504917625049231E07120013
chr102507305525073319E07143892
chr102507388825074157E07144725
chr102507598125076073E07146818
chr102507808525078149E07148922
chr102507818925078301E07149026
chr102507862325078887E07149460
chr102497993224980073E072-49090
chr102498014924980346E072-48817
chr102498443124984742E072-44421
chr102498478524984839E072-44324
chr102498508024985160E072-44003
chr102498535124985527E072-43636
chr102498561424985676E072-43487
chr102498581124985861E072-43302
chr102498588724985986E072-43177
chr102498602024986080E072-43083
chr102498633424986384E072-42779
chr102498880924989062E072-40101
chr102498908024989319E072-39844
chr102498973624989992E072-39171
chr102499015024990284E072-38879
chr102499045224990695E072-38468
chr102499070224990961E072-38202
chr102499226724992307E072-36856
chr102499233524992385E072-36778
chr102499239424992504E072-36659
chr102499269324993147E072-36016
chr102499464824994692E072-34471
chr102499479024994848E072-34315
chr102499489924994992E072-34171
chr102499502024995107E072-34056
chr102499533324996160E072-33003
chr102499622824996286E072-32877
chr102499632124996426E072-32737
chr102499646124996634E072-32529
chr102499672624996806E072-32357
chr102499686924996947E072-32216
chr102499699724997250E072-31913
chr102499935224999414E072-29749
chr102499944124999528E072-29635
chr102499955924999621E072-29542
chr102500083125000962E072-28201
chr102500119225001242E072-27921
chr102500150425001581E072-27582
chr102500171425001878E072-27285
chr102500199525002127E072-27036
chr102500214025002284E072-26879
chr102500241225002534E072-26629
chr102500261125002665E072-26498
chr102500275725002824E072-26339
chr102500284225002915E072-26248
chr102500484925004938E072-24225
chr102507203025072080E07242867
chr102507305525073319E07243892
chr102507335725073621E07244194
chr102507388825074157E07244725
chr102507598125076073E07246818
chr102507808525078149E07248922
chr102507818925078301E07249026
chr102507862325078887E07249460
chr102497993224980073E073-49090
chr102498014924980346E073-48817
chr102498478524984839E073-44324
chr102498535124985527E073-43636
chr102498561424985676E073-43487
chr102498581124985861E073-43302
chr102498588724985986E073-43177
chr102498602024986080E073-43083
chr102498752224987680E073-41483
chr102498775224987815E073-41348
chr102498789024988104E073-41059
chr102498852424988583E073-40580
chr102498861924988783E073-40380
chr102498880924989062E073-40101
chr102498908024989319E073-39844
chr102498973624989992E073-39171
chr102499015024990284E073-38879
chr102499045224990695E073-38468
chr102499070224990961E073-38202
chr102499165924991763E073-37400
chr102499464824994692E073-34471
chr102499479024994848E073-34315
chr102499489924994992E073-34171
chr102499502024995107E073-34056
chr102499622824996286E073-32877
chr102499632124996426E073-32737
chr102499646124996634E073-32529
chr102499672624996806E073-32357
chr102499686924996947E073-32216
chr102499699724997250E073-31913
chr102499819624998256E073-30907
chr102499829924998353E073-30810
chr102500037825000428E073-28735
chr102500069025000780E073-28383
chr102500083125000962E073-28201
chr102500119225001242E073-27921
chr102500150425001581E073-27582
chr102500171425001878E073-27285
chr102500199525002127E073-27036
chr102500484925004938E073-24225
chr102500605225006223E073-22940
chr102501665225017112E073-12051
chr102507335725073621E07344194
chr102507369625073746E07344533
chr102507388825074157E07344725
chr102498443124984742E074-44421
chr102498478524984839E074-44324
chr102498508024985160E074-44003
chr102498535124985527E074-43636
chr102498561424985676E074-43487
chr102498581124985861E074-43302
chr102498588724985986E074-43177
chr102498602024986080E074-43083
chr102498633424986384E074-42779
chr102498729724987494E074-41669
chr102498752224987680E074-41483
chr102498775224987815E074-41348
chr102498789024988104E074-41059
chr102498852424988583E074-40580
chr102498861924988783E074-40380
chr102498880924989062E074-40101
chr102498908024989319E074-39844
chr102498973624989992E074-39171
chr102499015024990284E074-38879
chr102499045224990695E074-38468
chr102499070224990961E074-38202
chr102499165924991763E074-37400
chr102499202224992126E074-37037
chr102499464824994692E074-34471
chr102499479024994848E074-34315
chr102499489924994992E074-34171
chr102499502024995107E074-34056
chr102499533324996160E074-33003
chr102499622824996286E074-32877
chr102499632124996426E074-32737
chr102499646124996634E074-32529
chr102499672624996806E074-32357
chr102499686924996947E074-32216
chr102499699724997250E074-31913
chr102499829924998353E074-30810
chr102500037825000428E074-28735
chr102500069025000780E074-28383
chr102500083125000962E074-28201
chr102500119225001242E074-27921
chr102500150425001581E074-27582
chr102500171425001878E074-27285
chr102500199525002127E074-27036
chr102500214025002284E074-26879
chr102500241225002534E074-26629
chr102500261125002665E074-26498
chr102500275725002824E074-26339
chr102500284225002915E074-26248
chr102500298025003177E074-25986
chr102500323025003304E074-25859
chr102500335725003484E074-25679
chr102500498725005786E074-23377
chr102500580025005916E074-23247
chr102500605225006223E074-22940
chr102500626725006330E074-22833
chr102500648225006563E074-22600
chr102500657825006677E074-22486
chr102500692225007116E074-22047
chr102501665225017112E074-12051
chr102507305525073319E07443892
chr102507335725073621E07444194
chr102507369625073746E07444533
chr102507388825074157E07444725
chr102507598125076073E07446818
chr102507818925078301E07449026
chr102507862325078887E07449460
chr102498535124985527E081-43636
chr102498561424985676E081-43487
chr102498581124985861E081-43302
chr102498588724985986E081-43177
chr102498602024986080E081-43083
chr102498880924989062E081-40101
chr102499464824994692E081-34471
chr102499479024994848E081-34315
chr102499489924994992E081-34171
chr102499502024995107E081-34056
chr102499533324996160E081-33003
chr102499622824996286E081-32877
chr102499632124996426E081-32737
chr102499646124996634E081-32529
chr102499672624996806E081-32357
chr102499686924996947E081-32216
chr102499699724997250E081-31913
chr102499819624998256E081-30907
chr102499829924998353E081-30810
chr102499840324998466E081-30697
chr102499872624998776E081-30387
chr102499891324998973E081-30190
chr102499935224999414E081-29749
chr102499944124999528E081-29635
chr102499955924999621E081-29542
chr102500069025000780E081-28383
chr102500083125000962E081-28201
chr102500119225001242E081-27921
chr102500150425001581E081-27582
chr102500171425001878E081-27285
chr102500199525002127E081-27036
chr102500214025002284E081-26879
chr102500241225002534E081-26629
chr102500261125002665E081-26498
chr102500275725002824E081-26339
chr102500284225002915E081-26248
chr102500298025003177E081-25986
chr102500323025003304E081-25859
chr102500335725003484E081-25679
chr102500484925004938E081-24225
chr102500498725005786E081-23377
chr102500648225006563E081-22600
chr102500657825006677E081-22486
chr102501441925014617E081-14546
chr102507862325078887E08149460
chr102498478524984839E082-44324
chr102498508024985160E082-44003
chr102498535124985527E082-43636
chr102498561424985676E082-43487
chr102498729724987494E082-41669
chr102498752224987680E082-41483
chr102499239424992504E082-36659
chr102499269324993147E082-36016
chr102499479024994848E082-34315
chr102499489924994992E082-34171
chr102499502024995107E082-34056
chr102499533324996160E082-33003
chr102499622824996286E082-32877
chr102499632124996426E082-32737
chr102499646124996634E082-32529
chr102499672624996806E082-32357
chr102499840324998466E082-30697
chr102499872624998776E082-30387
chr102499891324998973E082-30190
chr102499935224999414E082-29749
chr102499944124999528E082-29635
chr102500019125000265E082-28898
chr102500119225001242E082-27921
chr102507862325078887E08249460










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr102500822625008555E067-20608
chr102500861125008663E067-20500
chr102500874425008794E067-20369
chr102500888725008947E067-20216
chr102500900125009166E067-19997
chr102500920725009563E067-19600
chr102500957325009800E067-19363
chr102500998225011089E067-18074
chr102501117725014357E067-14806
chr102500822625008555E068-20608
chr102500861125008663E068-20500
chr102500874425008794E068-20369
chr102500888725008947E068-20216
chr102500900125009166E068-19997
chr102500920725009563E068-19600
chr102500957325009800E068-19363
chr102500998225011089E068-18074
chr102501117725014357E068-14806
chr102500822625008555E069-20608
chr102500861125008663E069-20500
chr102500874425008794E069-20369
chr102500888725008947E069-20216
chr102500900125009166E069-19997
chr102500920725009563E069-19600
chr102500957325009800E069-19363
chr102501117725014357E069-14806
chr102500822625008555E070-20608
chr102500861125008663E070-20500
chr102500874425008794E070-20369
chr102500888725008947E070-20216
chr102500900125009166E070-19997
chr102500920725009563E070-19600
chr102500957325009800E070-19363
chr102500998225011089E070-18074
chr102501117725014357E070-14806
chr102500822625008555E071-20608
chr102500861125008663E071-20500
chr102500874425008794E071-20369
chr102500888725008947E071-20216
chr102500900125009166E071-19997
chr102500920725009563E071-19600
chr102500957325009800E071-19363
chr102501117725014357E071-14806
chr102500822625008555E072-20608
chr102500861125008663E072-20500
chr102500874425008794E072-20369
chr102500888725008947E072-20216
chr102500900125009166E072-19997
chr102500920725009563E072-19600
chr102500957325009800E072-19363
chr102500998225011089E072-18074
chr102501117725014357E072-14806
chr102500822625008555E073-20608
chr102500861125008663E073-20500
chr102500874425008794E073-20369
chr102500888725008947E073-20216
chr102500900125009166E073-19997
chr102500920725009563E073-19600
chr102500957325009800E073-19363
chr102500998225011089E073-18074
chr102501117725014357E073-14806
chr102500822625008555E074-20608
chr102500861125008663E074-20500
chr102500874425008794E074-20369
chr102500888725008947E074-20216
chr102500900125009166E074-19997
chr102500920725009563E074-19600
chr102500957325009800E074-19363
chr102500998225011089E074-18074
chr102501117725014357E074-14806
chr102500822625008555E081-20608
chr102500861125008663E081-20500
chr102500874425008794E081-20369
chr102500888725008947E081-20216
chr102500900125009166E081-19997
chr102500920725009563E081-19600
chr102500957325009800E081-19363
chr102500998225011089E081-18074
chr102501117725014357E081-14806
chr102500822625008555E082-20608
chr102500861125008663E082-20500
chr102500874425008794E082-20369
chr102500888725008947E082-20216
chr102500900125009166E082-19997
chr102500920725009563E082-19600
chr102500957325009800E082-19363
chr102500998225011089E082-18074
chr102501117725014357E082-14806