Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 17 | NC_000017.11:g.68393505T>C |
GRCh37.p13 chr 17 | NC_000017.10:g.66389646T>C |
ARSG RefSeqGene | NG_032814.1:g.139324T>C |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
ARSG transcript variant 2 | NM_001267727.1:c. | N/A | Intron Variant |
ARSG transcript variant 1 | NM_014960.4:c. | N/A | Intron Variant |
ARSG transcript variant X10 | XM_005257170.3:c. | N/A | Intron Variant |
ARSG transcript variant X2 | XM_006721777.3:c. | N/A | Intron Variant |
ARSG transcript variant X1 | XM_011524535.2:c. | N/A | Intron Variant |
ARSG transcript variant X1 | XM_011524536.2:c. | N/A | Intron Variant |
ARSG transcript variant X3 | XM_011524537.1:c. | N/A | Intron Variant |
ARSG transcript variant X3 | XM_011524538.2:c. | N/A | Intron Variant |
ARSG transcript variant X8 | XM_011524540.2:c. | N/A | Intron Variant |
ARSG transcript variant X12 | XM_011524541.2:c. | N/A | Intron Variant |
ARSG transcript variant X13 | XM_011524542.2:c. | N/A | Intron Variant |
ARSG transcript variant X18 | XM_011524543.2:c. | N/A | Intron Variant |
ARSG transcript variant X19 | XM_011524544.2:c. | N/A | Intron Variant |
ARSG transcript variant X22 | XM_011524545.2:c. | N/A | Intron Variant |
ARSG transcript variant X7 | XM_011524546.2:c. | N/A | Intron Variant |
ARSG transcript variant X6 | XM_017024360.1:c. | N/A | Intron Variant |
ARSG transcript variant X9 | XM_017024361.1:c. | N/A | Intron Variant |
ARSG transcript variant X14 | XM_017024362.1:c. | N/A | Intron Variant |
ARSG transcript variant X15 | XM_017024363.1:c. | N/A | Intron Variant |
ARSG transcript variant X16 | XM_017024364.1:c. | N/A | Intron Variant |
ARSG transcript variant X4 | XM_017024365.1:c. | N/A | Intron Variant |
ARSG transcript variant X20 | XM_017024366.1:c. | N/A | Intron Variant |
ARSG transcript variant X21 | XM_017024367.1:c. | N/A | Intron Variant |
ARSG transcript variant X6 | XM_017024368.1:c. | N/A | Intron Variant |
ARSG transcript variant X25 | XM_005257172.3:c. | N/A | Genic Downstream Transcript Variant |
ARSG transcript variant X26 | XM_006721779.3:c. | N/A | Genic Downstream Transcript Variant |
ARSG transcript variant X4 | XR_001752452.1:n. | N/A | Intron Variant |
ARSG transcript variant X11 | XR_001752453.1:n. | N/A | Intron Variant |
ARSG transcript variant X23 | XR_001752454.1:n. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | T=0.679 | C=0.321 |
1000Genomes | American | Sub | 694 | T=0.950 | C=0.050 |
1000Genomes | East Asian | Sub | 1008 | T=0.636 | C=0.364 |
1000Genomes | Europe | Sub | 1006 | T=0.943 | C=0.057 |
1000Genomes | Global | Study-wide | 5008 | T=0.774 | C=0.226 |
1000Genomes | South Asian | Sub | 978 | T=0.750 | C=0.250 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | T=0.956 | C=0.044 |
The Genome Aggregation Database | African | Sub | 8706 | T=0.708 | C=0.292 |
The Genome Aggregation Database | American | Sub | 838 | T=0.950 | C=0.050 |
The Genome Aggregation Database | East Asian | Sub | 1620 | T=0.603 | C=0.397 |
The Genome Aggregation Database | Europe | Sub | 18484 | T=0.959 | C=0.040 |
The Genome Aggregation Database | Global | Study-wide | 29950 | T=0.866 | C=0.133 |
The Genome Aggregation Database | Other | Sub | 302 | T=0.900 | C=0.100 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | T=0.842 | C=0.157 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | T=0.957 | C=0.043 |
PMID | Title | Author | Journal |
---|---|---|---|
21529783 | A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications. | Heath AC | Biol Psychiatry |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs6501422 | 6.5E-05 | alcoholism (heaviness of drinking) | 21529783 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr17 | 66373288 | 66373714 | E067 | -15932 |
chr17 | 66373288 | 66373714 | E068 | -15932 |
chr17 | 66373890 | 66375380 | E068 | -14266 |
chr17 | 66375399 | 66375547 | E068 | -14099 |
chr17 | 66381933 | 66382064 | E068 | -7582 |
chr17 | 66382097 | 66382393 | E068 | -7253 |
chr17 | 66382097 | 66382393 | E070 | -7253 |
chr17 | 66382414 | 66382972 | E070 | -6674 |
chr17 | 66373288 | 66373714 | E071 | -15932 |
chr17 | 66381933 | 66382064 | E071 | -7582 |
chr17 | 66382097 | 66382393 | E071 | -7253 |
chr17 | 66382414 | 66382972 | E071 | -6674 |
chr17 | 66432083 | 66432932 | E071 | 42437 |
chr17 | 66433382 | 66433436 | E071 | 43736 |
chr17 | 66433466 | 66433518 | E071 | 43820 |
chr17 | 66437155 | 66437780 | E071 | 47509 |
chr17 | 66437795 | 66438191 | E071 | 48149 |
chr17 | 66438250 | 66438353 | E071 | 48604 |
chr17 | 66438528 | 66438593 | E071 | 48882 |
chr17 | 66438643 | 66438707 | E071 | 48997 |
chr17 | 66438773 | 66438823 | E071 | 49127 |
chr17 | 66438945 | 66439026 | E071 | 49299 |
chr17 | 66439063 | 66439200 | E071 | 49417 |
chr17 | 66373288 | 66373714 | E072 | -15932 |
chr17 | 66432083 | 66432932 | E072 | 42437 |
chr17 | 66373288 | 66373714 | E073 | -15932 |
chr17 | 66373890 | 66375380 | E073 | -14266 |
chr17 | 66394576 | 66394687 | E073 | 4930 |
chr17 | 66373288 | 66373714 | E074 | -15932 |
chr17 | 66373890 | 66375380 | E074 | -14266 |
chr17 | 66438643 | 66438707 | E074 | 48997 |
chr17 | 66438773 | 66438823 | E074 | 49127 |
chr17 | 66438945 | 66439026 | E074 | 49299 |
chr17 | 66382097 | 66382393 | E081 | -7253 |
chr17 | 66382414 | 66382972 | E081 | -6674 |
chr17 | 66383012 | 66383200 | E081 | -6446 |
chr17 | 66427284 | 66427609 | E081 | 37638 |
chr17 | 66381933 | 66382064 | E082 | -7582 |
chr17 | 66382097 | 66382393 | E082 | -7253 |
chr17 | 66382414 | 66382972 | E082 | -6674 |
chr17 | 66384096 | 66384359 | E082 | -5287 |
chr17 | 66384412 | 66384794 | E082 | -4852 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr17 | 66409758 | 66409853 | E082 | 20112 |
chr17 | 66410187 | 66410385 | E082 | 20541 |