SNP Detail Info-rs6505955

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0205 (5508/26820,GnomAD)
G=0239 (1198/5008,1000G)
G=0137 (527/3854,ALSPAC)
G=0131 (487/3708,TWINSUK)

Position: chr18:1731153 (GRCh38.p7) (18p11.32)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 18	NC_000018.10:g.1731153A>G
GRCh37.p13 chr 18	NC_000018.9:g.1731154A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.699	G=0.301
1000Genomes	American	Sub	694	A=0.740	G=0.260
1000Genomes	East Asian	Sub	1008	A=0.715	G=0.285
1000Genomes	Europe	Sub	1006	A=0.861	G=0.139
1000Genomes	Global	Study-wide	5008	A=0.761	G=0.239
1000Genomes	South Asian	Sub	978	A=0.800	G=0.200
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.863	G=0.137
The Genome Aggregation Database	African	Sub	7988	A=0.686	G=0.314
The Genome Aggregation Database	American	Sub	758	A=0.700	G=0.300
The Genome Aggregation Database	East Asian	Sub	1514	A=0.711	G=0.289
The Genome Aggregation Database	Europe	Sub	16278	A=0.858	G=0.141
The Genome Aggregation Database	Global	Study-wide	26820	A=0.794	G=0.205
The Genome Aggregation Database	Other	Sub	282	A=0.880	G=0.120
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.869	G=0.131

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs6505955	0.000961	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs6505955