SNP Detail Info-rs6531366

Organism: Homo sapiens

Alleles: A>C / A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C=0485 (14509/29882,GnomAD)
A==0494 (14391/29118,TOPMED)
C=0479 (2397/5008,1000G)

Position: chr4:35513892 (GRCh38.p7) (4p15.1)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 6 Enhancers around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.489	C=0.511
1000Genomes	American	Sub	694	A=0.460	C=0.540
1000Genomes	East Asian	Sub	1008	A=0.707	C=0.293
1000Genomes	Europe	Sub	1006	A=0.535	C=0.465
1000Genomes	Global	Study-wide	5008	A=0.521	C=0.479
1000Genomes	South Asian	Sub	978	A=0.400	C=0.600
The Genome Aggregation Database	African	Sub	8706	A=0.492	C=0.508
The Genome Aggregation Database	American	Sub	832	A=0.430	C=0.570
The Genome Aggregation Database	East Asian	Sub	1606	A=0.740	C=0.260
The Genome Aggregation Database	Europe	Sub	18436	A=0.508	C=0.491
The Genome Aggregation Database	Global	Study-wide	29882	A=0.514	C=0.485
The Genome Aggregation Database	Other	Sub	302	A=0.580	C=0.420
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.494	C=0.505

PMID	Title	Author	Journal
17158188	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Bierut LJ	Hum Mol Genet

SNP ID	p-value	Traits	Study
rs6531366	0.000378	nicotine dependence	17158188

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr4	41798934	41799089	E069	33005
chr4	41798934	41799089	E074	33005
chr4	41799236	41799401	E074	33307
chr4	41733617	41733973	E081	-31956
chr4	41744831	41744899	E081	-21030
chr4	41744831	41744899	E082	-21030

rs6531366