SNP Detail Info-rs6547332

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0323 (9681/29890,GnomAD)
A=0401 (11679/29116,TOPMED)
A=0366 (1831/5008,1000G)
A=0158 (609/3854,ALSPAC)
A=0149 (554/3708,TWINSUK)

Position: chr2:80791762 (GRCh38.p7) (2p12)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 2	NC_000002.12:g.80791762G>A
GRCh37.p13 chr 2	NC_000002.11:g.81018887G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.213	A=0.787
1000Genomes	American	Sub	694	G=0.820	A=0.180
1000Genomes	East Asian	Sub	1008	G=0.705	A=0.295
1000Genomes	Europe	Sub	1006	G=0.875	A=0.125
1000Genomes	Global	Study-wide	5008	G=0.634	A=0.366
1000Genomes	South Asian	Sub	978	G=0.750	A=0.250
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.842	A=0.158
The Genome Aggregation Database	African	Sub	8708	G=0.311	A=0.689
The Genome Aggregation Database	American	Sub	836	G=0.830	A=0.170
The Genome Aggregation Database	East Asian	Sub	1580	G=0.727	A=0.273
The Genome Aggregation Database	Europe	Sub	18464	G=0.834	A=0.165
The Genome Aggregation Database	Global	Study-wide	29890	G=0.676	A=0.323
The Genome Aggregation Database	Other	Sub	302	G=0.840	A=0.160
Trans-Omics for Precision Medicine	Global	Study-wide	29116	G=0.598	A=0.401
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.851	A=0.149

PMID	Title	Author	Journal
17158188	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Bierut LJ	Hum Mol Genet

SNP ID	p-value	Traits	Study
rs6547332	0.000869	nicotine dependence	17158188

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs6547332