rs656948

Homo sapiens
C>T
MIR4300HG : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C==0269 (8061/29934,GnomAD)
C==0232 (6758/29118,TOPMED)
C==0246 (1231/5008,1000G)
C==0270 (1040/3854,ALSPAC)
C==0283 (1048/3708,TWINSUK)
chr11:82041701 (GRCh38.p7) (11q14.1)
AD
GWASdb2
1   publication(s)
See rs on genome
10 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.82041701C>T
GRCh37.p13 chr 11NC_000011.9:g.81752743C>T

Gene: MIR4300HG, MIR4300 host gene(minus strand)

Molecule type Change Amino acid[Codon] SO Term
MIR4300HG transcriptNR_120571.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.094T=0.906
1000GenomesAmericanSub694C=0.390T=0.610
1000GenomesEast AsianSub1008C=0.420T=0.580
1000GenomesEuropeSub1006C=0.282T=0.718
1000GenomesGlobalStudy-wide5008C=0.246T=0.754
1000GenomesSouth AsianSub978C=0.130T=0.870
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.270T=0.730
The Genome Aggregation DatabaseAfricanSub8716C=0.123T=0.877
The Genome Aggregation DatabaseAmericanSub836C=0.350T=0.650
The Genome Aggregation DatabaseEast AsianSub1618C=0.451T=0.549
The Genome Aggregation DatabaseEuropeSub18462C=0.320T=0.679
The Genome Aggregation DatabaseGlobalStudy-wide29934C=0.269T=0.730
The Genome Aggregation DatabaseOtherSub302C=0.210T=0.790
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.232T=0.767
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.283T=0.717
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs6569483.7E-05alcoholism (heaviness of drinking)21529783

eQTL of rs656948 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs656948 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr118179413081794292E07041387
chr118179433881794394E07041595
chr118179413081794292E07141387
chr118179433881794394E07141595
chr118178716981787557E08134426
chr118179413081794292E08141387
chr118179433881794394E08141595
chr118178716981787557E08234426
chr118179413081794292E08241387
chr118179433881794394E08241595