rs6600832

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
C==0458 (13708/29896,GnomAD)
C==0440 (12824/29118,TOPMED)
C==0380 (1901/5008,1000G)
T=0494 (1904/3854,ALSPAC)
C==0484 (1795/3708,TWINSUK)
chr4:70487791 (GRCh38.p7) (4q13.3)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.70487791C>T
GRCh37.p13 chr 4NC_000004.11:g.71353508C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.451T=0.549
1000GenomesAmericanSub694C=0.500T=0.500
1000GenomesEast AsianSub1008C=0.201T=0.799
1000GenomesEuropeSub1006C=0.490T=0.510
1000GenomesGlobalStudy-wide5008C=0.380T=0.620
1000GenomesSouth AsianSub978C=0.270T=0.730
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.506T=0.494
The Genome Aggregation DatabaseAfricanSub8698C=0.443T=0.557
The Genome Aggregation DatabaseAmericanSub836C=0.480T=0.520
The Genome Aggregation DatabaseEast AsianSub1602C=0.213T=0.787
The Genome Aggregation DatabaseEuropeSub18458C=0.488T=0.511
The Genome Aggregation DatabaseGlobalStudy-wide29896C=0.458T=0.541
The Genome Aggregation DatabaseOtherSub302C=0.330T=0.670
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.440T=0.559
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.484T=0.516
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs66008323.6E-05alcoholism (heaviness of drinking)21529783

eQTL of rs6600832 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6600832 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.