rs6602203

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
C==0392 (11740/29894,GnomAD)
C==0349 (10175/29118,TOPMED)
C==0351 (1758/5008,1000G)
C==0468 (1804/3854,ALSPAC)
C==0462 (1714/3708,TWINSUK)
chr10:17554122 (GRCh38.p7) (10p12.33)
AD
GWASdb2
1   publication(s)
See rs on genome
4 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.17554122C>T
GRCh37.p13 chr 10NC_000010.10:g.17596121C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.193T=0.807
1000GenomesAmericanSub694C=0.490T=0.510
1000GenomesEast AsianSub1008C=0.361T=0.639
1000GenomesEuropeSub1006C=0.496T=0.504
1000GenomesGlobalStudy-wide5008C=0.351T=0.649
1000GenomesSouth AsianSub978C=0.310T=0.690
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.468T=0.532
The Genome Aggregation DatabaseAfricanSub8694C=0.222T=0.778
The Genome Aggregation DatabaseAmericanSub834C=0.550T=0.450
The Genome Aggregation DatabaseEast AsianSub1614C=0.328T=0.672
The Genome Aggregation DatabaseEuropeSub18450C=0.469T=0.530
The Genome Aggregation DatabaseGlobalStudy-wide29894C=0.392T=0.607
The Genome Aggregation DatabaseOtherSub302C=0.500T=0.500
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.349T=0.650
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.462T=0.538
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs66022030.000874alcohol dependence21314694

eQTL of rs6602203 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6602203 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr101757538517575765E067-20356
chr101757584117576021E067-20100
chr101757584117576021E069-20100
chr101757584117576021E072-20100