SNP Detail Info-rs6608304

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0114 (2377/20697,GnomAD)
G==0140 (528/3775,1000G)
G==0011 (41/3708,TWINSUK)
G==0011 (33/2889,ALSPAC)

Position: chrX:150065001 (GRCh38.p7) (Xq28)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 6 Enhancers around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1003	G=0.439	A=0.561
1000Genomes	American	Sub	524	G=0.040	A=0.960
1000Genomes	East Asian	Sub	764	G=0.040	A=0.960
1000Genomes	Europe	Sub	766	G=0.010	A=0.990
1000Genomes	Global	Study-wide	3775	G=0.140	A=0.860
1000Genomes	South Asian	Sub	718	G=0.040	A=0.960
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	2889	G=0.011	A=0.989
The Genome Aggregation Database	African	Sub	5742	G=0.386	A=0.614
The Genome Aggregation Database	American	Sub	609	G=0.030	A=0.970
The Genome Aggregation Database	East Asian	Sub	1016	G=0.045	A=0.955
The Genome Aggregation Database	Europe	Sub	13143	G=0.006	A=0.993
The Genome Aggregation Database	Global	Study-wide	20697	G=0.114	A=0.885
The Genome Aggregation Database	Other	Sub	187	G=0.010	A=0.990
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.011	A=0.989

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs6608304	0.000204	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chrX	5568972	5569348	E068	-20051
chrX	5626025	5626084	E068	36626
chrX	5568972	5569348	E072	-20051
chrX	5626025	5626084	E073	36626
chrX	5558124	5558705	E081	-30694
chrX	5613791	5613918	E081	24392

rs6608304