SNP Detail Info-rs662751

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0286 (8575/29906,GnomAD)
G=0269 (7851/29118,TOPMED)
G=0296 (1483/5008,1000G)
G=0347 (1336/3854,ALSPAC)
G=0339 (1256/3708,TWINSUK)

Position: chr6:20027407 (GRCh38.p7) (6p22.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 7 Enhancers around

Promoter: 8 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 6	NC_000006.12:g.20027407A>G
GRCh37.p13 chr 6	NC_000006.11:g.20027638A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.821	G=0.179
1000Genomes	American	Sub	694	A=0.670	G=0.330
1000Genomes	East Asian	Sub	1008	A=0.650	G=0.350
1000Genomes	Europe	Sub	1006	A=0.660	G=0.340
1000Genomes	Global	Study-wide	5008	A=0.704	G=0.296
1000Genomes	South Asian	Sub	978	A=0.670	G=0.330
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.653	G=0.347
The Genome Aggregation Database	African	Sub	8696	A=0.819	G=0.181
The Genome Aggregation Database	American	Sub	832	A=0.680	G=0.320
The Genome Aggregation Database	East Asian	Sub	1608	A=0.642	G=0.358
The Genome Aggregation Database	Europe	Sub	18468	A=0.670	G=0.329
The Genome Aggregation Database	Global	Study-wide	29906	A=0.713	G=0.286
The Genome Aggregation Database	Other	Sub	302	A=0.770	G=0.230
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.730	G=0.269
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.661	G=0.339

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs662751	0.00084	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr6	20058818	20058888	E070	31180
chr6	20059264	20059475	E070	31626
chr6	20059489	20059559	E070	31851
chr6	20068696	20068772	E070	41058
chr6	20069413	20069792	E070	41775
chr6	20058818	20058888	E081	31180
chr6	20068696	20068772	E081	41058

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr6	20013484	20013561	E067	-14077
chr6	20013484	20013561	E068	-14077
chr6	20013484	20013561	E069	-14077
chr6	20013484	20013561	E071	-14077
chr6	20013484	20013561	E072	-14077
chr6	20013484	20013561	E073	-14077
chr6	20013484	20013561	E074	-14077
chr6	20013484	20013561	E082	-14077

rs662751