Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 1 | NC_000001.11:g.226068253G>A |
GRCh37.p13 chr 1 | NC_000001.10:g.226255954G>A |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
H3F3A transcript | NM_002107.4:c. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.158 | A=0.842 |
1000Genomes | American | Sub | 694 | G=0.030 | A=0.970 |
1000Genomes | East Asian | Sub | 1008 | G=0.000 | A=1.000 |
1000Genomes | Europe | Sub | 1006 | G=0.001 | A=0.999 |
1000Genomes | Global | Study-wide | 5008 | G=0.046 | A=0.954 |
1000Genomes | South Asian | Sub | 978 | G=0.000 | A=1.000 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.001 | A=0.999 |
The Genome Aggregation Database | African | Sub | 8724 | G=0.149 | A=0.851 |
The Genome Aggregation Database | American | Sub | 838 | G=0.000 | A=1.000 |
The Genome Aggregation Database | East Asian | Sub | 1618 | G=0.000 | A=1.000 |
The Genome Aggregation Database | Europe | Sub | 18500 | G=0.000 | A=0.999 |
The Genome Aggregation Database | Global | Study-wide | 29982 | G=0.043 | A=0.956 |
The Genome Aggregation Database | Other | Sub | 302 | G=0.000 | A=1.000 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29116 | G=0.072 | A=0.927 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.000 | A=1.000 |
PMID | Title | Author | Journal |
---|---|---|---|
20158304 | A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations. | Lind PA | Twin Res Hum Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs6664668 | 6.96E-06 | alcohol and nictotine co-dependence | 20158304 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr1 | 226222099 | 226222633 | E067 | -33321 |
chr1 | 226254013 | 226254068 | E067 | -1886 |
chr1 | 226254081 | 226254165 | E067 | -1789 |
chr1 | 226254313 | 226254661 | E067 | -1293 |
chr1 | 226300053 | 226300103 | E067 | 44099 |
chr1 | 226300241 | 226300445 | E067 | 44287 |
chr1 | 226222099 | 226222633 | E068 | -33321 |
chr1 | 226254013 | 226254068 | E068 | -1886 |
chr1 | 226254081 | 226254165 | E068 | -1789 |
chr1 | 226254313 | 226254661 | E068 | -1293 |
chr1 | 226256040 | 226256119 | E068 | 86 |
chr1 | 226296749 | 226296996 | E068 | 40795 |
chr1 | 226300053 | 226300103 | E068 | 44099 |
chr1 | 226300241 | 226300445 | E068 | 44287 |
chr1 | 226222099 | 226222633 | E069 | -33321 |
chr1 | 226254313 | 226254661 | E069 | -1293 |
chr1 | 226254697 | 226254741 | E069 | -1213 |
chr1 | 226254821 | 226254871 | E069 | -1083 |
chr1 | 226300053 | 226300103 | E069 | 44099 |
chr1 | 226300241 | 226300445 | E069 | 44287 |
chr1 | 226248373 | 226248493 | E070 | -7461 |
chr1 | 226287766 | 226287821 | E070 | 31812 |
chr1 | 226287837 | 226287892 | E070 | 31883 |
chr1 | 226296749 | 226296996 | E070 | 40795 |
chr1 | 226300053 | 226300103 | E070 | 44099 |
chr1 | 226300241 | 226300445 | E070 | 44287 |
chr1 | 226235262 | 226235511 | E071 | -20443 |
chr1 | 226254013 | 226254068 | E071 | -1886 |
chr1 | 226254081 | 226254165 | E071 | -1789 |
chr1 | 226254313 | 226254661 | E071 | -1293 |
chr1 | 226254697 | 226254741 | E071 | -1213 |
chr1 | 226254821 | 226254871 | E071 | -1083 |
chr1 | 226287766 | 226287821 | E071 | 31812 |
chr1 | 226296749 | 226296996 | E071 | 40795 |
chr1 | 226300053 | 226300103 | E071 | 44099 |
chr1 | 226222099 | 226222633 | E072 | -33321 |
chr1 | 226254013 | 226254068 | E072 | -1886 |
chr1 | 226254081 | 226254165 | E072 | -1789 |
chr1 | 226254313 | 226254661 | E072 | -1293 |
chr1 | 226254697 | 226254741 | E072 | -1213 |
chr1 | 226254821 | 226254871 | E072 | -1083 |
chr1 | 226296749 | 226296996 | E072 | 40795 |
chr1 | 226242746 | 226242836 | E073 | -13118 |
chr1 | 226254013 | 226254068 | E073 | -1886 |
chr1 | 226254081 | 226254165 | E073 | -1789 |
chr1 | 226254313 | 226254661 | E073 | -1293 |
chr1 | 226300053 | 226300103 | E073 | 44099 |
chr1 | 226222099 | 226222633 | E074 | -33321 |
chr1 | 226254013 | 226254068 | E074 | -1886 |
chr1 | 226254081 | 226254165 | E074 | -1789 |
chr1 | 226287766 | 226287821 | E074 | 31812 |
chr1 | 226287837 | 226287892 | E074 | 31883 |
chr1 | 226296749 | 226296996 | E074 | 40795 |
chr1 | 226222099 | 226222633 | E081 | -33321 |
chr1 | 226222099 | 226222633 | E082 | -33321 |
chr1 | 226242369 | 226242508 | E082 | -13446 |
chr1 | 226242746 | 226242836 | E082 | -13118 |
chr1 | 226248373 | 226248493 | E082 | -7461 |
chr1 | 226300053 | 226300103 | E082 | 44099 |
chr1 | 226300241 | 226300445 | E082 | 44287 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr1 | 226248729 | 226252065 | E067 | -3889 |
chr1 | 226252142 | 226252450 | E067 | -3504 |
chr1 | 226252494 | 226252929 | E067 | -3025 |
chr1 | 226270605 | 226271897 | E067 | 14651 |
chr1 | 226288151 | 226288252 | E067 | 32197 |
chr1 | 226288314 | 226288518 | E067 | 32360 |
chr1 | 226288593 | 226289075 | E067 | 32639 |
chr1 | 226297086 | 226299919 | E067 | 41132 |
chr1 | 226248729 | 226252065 | E068 | -3889 |
chr1 | 226252142 | 226252450 | E068 | -3504 |
chr1 | 226252494 | 226252929 | E068 | -3025 |
chr1 | 226270605 | 226271897 | E068 | 14651 |
chr1 | 226288151 | 226288252 | E068 | 32197 |
chr1 | 226288314 | 226288518 | E068 | 32360 |
chr1 | 226288593 | 226289075 | E068 | 32639 |
chr1 | 226297086 | 226299919 | E068 | 41132 |
chr1 | 226248729 | 226252065 | E069 | -3889 |
chr1 | 226252142 | 226252450 | E069 | -3504 |
chr1 | 226252494 | 226252929 | E069 | -3025 |
chr1 | 226270605 | 226271897 | E069 | 14651 |
chr1 | 226288151 | 226288252 | E069 | 32197 |
chr1 | 226288314 | 226288518 | E069 | 32360 |
chr1 | 226288593 | 226289075 | E069 | 32639 |
chr1 | 226297086 | 226299919 | E069 | 41132 |
chr1 | 226248729 | 226252065 | E070 | -3889 |
chr1 | 226252142 | 226252450 | E070 | -3504 |
chr1 | 226252494 | 226252929 | E070 | -3025 |
chr1 | 226270605 | 226271897 | E070 | 14651 |
chr1 | 226288314 | 226288518 | E070 | 32360 |
chr1 | 226297086 | 226299919 | E070 | 41132 |
chr1 | 226248729 | 226252065 | E071 | -3889 |
chr1 | 226252142 | 226252450 | E071 | -3504 |
chr1 | 226252494 | 226252929 | E071 | -3025 |
chr1 | 226270605 | 226271897 | E071 | 14651 |
chr1 | 226288151 | 226288252 | E071 | 32197 |
chr1 | 226288314 | 226288518 | E071 | 32360 |
chr1 | 226288593 | 226289075 | E071 | 32639 |
chr1 | 226297086 | 226299919 | E071 | 41132 |
chr1 | 226248729 | 226252065 | E072 | -3889 |
chr1 | 226252142 | 226252450 | E072 | -3504 |
chr1 | 226252494 | 226252929 | E072 | -3025 |
chr1 | 226270605 | 226271897 | E072 | 14651 |
chr1 | 226288151 | 226288252 | E072 | 32197 |
chr1 | 226288314 | 226288518 | E072 | 32360 |
chr1 | 226288593 | 226289075 | E072 | 32639 |
chr1 | 226297086 | 226299919 | E072 | 41132 |
chr1 | 226248729 | 226252065 | E073 | -3889 |
chr1 | 226252142 | 226252450 | E073 | -3504 |
chr1 | 226252494 | 226252929 | E073 | -3025 |
chr1 | 226270605 | 226271897 | E073 | 14651 |
chr1 | 226288151 | 226288252 | E073 | 32197 |
chr1 | 226288314 | 226288518 | E073 | 32360 |
chr1 | 226288593 | 226289075 | E073 | 32639 |
chr1 | 226297086 | 226299919 | E073 | 41132 |
chr1 | 226248729 | 226252065 | E074 | -3889 |
chr1 | 226252142 | 226252450 | E074 | -3504 |
chr1 | 226252494 | 226252929 | E074 | -3025 |
chr1 | 226270605 | 226271897 | E074 | 14651 |
chr1 | 226288151 | 226288252 | E074 | 32197 |
chr1 | 226288314 | 226288518 | E074 | 32360 |
chr1 | 226297086 | 226299919 | E074 | 41132 |
chr1 | 226252142 | 226252450 | E081 | -3504 |
chr1 | 226252494 | 226252929 | E081 | -3025 |
chr1 | 226248729 | 226252065 | E082 | -3889 |
chr1 | 226252142 | 226252450 | E082 | -3504 |
chr1 | 226252494 | 226252929 | E082 | -3025 |
chr1 | 226270605 | 226271897 | E082 | 14651 |
chr1 | 226288151 | 226288252 | E082 | 32197 |
chr1 | 226288314 | 226288518 | E082 | 32360 |
chr1 | 226288593 | 226289075 | E082 | 32639 |
chr1 | 226297086 | 226299919 | E082 | 41132 |