Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 1 | NC_000001.11:g.214243481A>G |
GRCh37.p13 chr 1 | NC_000001.10:g.214416824A>G |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.966 | G=0.034 |
1000Genomes | American | Sub | 694 | A=0.840 | G=0.160 |
1000Genomes | East Asian | Sub | 1008 | A=0.979 | G=0.021 |
1000Genomes | Europe | Sub | 1006 | A=0.716 | G=0.284 |
1000Genomes | Global | Study-wide | 5008 | A=0.856 | G=0.144 |
1000Genomes | South Asian | Sub | 978 | A=0.740 | G=0.260 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.702 | G=0.298 |
The Genome Aggregation Database | African | Sub | 8650 | A=0.942 | G=0.058 |
The Genome Aggregation Database | American | Sub | 834 | A=0.830 | G=0.170 |
The Genome Aggregation Database | East Asian | Sub | 1614 | A=0.973 | G=0.027 |
The Genome Aggregation Database | Europe | Sub | 18362 | A=0.738 | G=0.262 |
The Genome Aggregation Database | Global | Study-wide | 29760 | A=0.811 | G=0.188 |
The Genome Aggregation Database | Other | Sub | 300 | A=0.640 | G=0.360 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29116 | A=0.802 | G=0.197 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.714 | G=0.286 |
PMID | Title | Author | Journal |
---|---|---|---|
21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs6665548 | 0.000604 | alcohol dependence | 21314694 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr1 | 214382313 | 214382401 | E067 | -34423 |
chr1 | 214382914 | 214383013 | E067 | -33811 |
chr1 | 214381961 | 214382147 | E068 | -34677 |
chr1 | 214382313 | 214382401 | E068 | -34423 |
chr1 | 214382914 | 214383013 | E068 | -33811 |
chr1 | 214387349 | 214388054 | E068 | -28770 |
chr1 | 214434761 | 214435468 | E068 | 17937 |
chr1 | 214435576 | 214435692 | E068 | 18752 |
chr1 | 214382914 | 214383013 | E069 | -33811 |
chr1 | 214401412 | 214401519 | E069 | -15305 |
chr1 | 214401637 | 214401913 | E069 | -14911 |
chr1 | 214402220 | 214402344 | E069 | -14480 |
chr1 | 214402356 | 214402732 | E069 | -14092 |
chr1 | 214435576 | 214435692 | E069 | 18752 |
chr1 | 214456066 | 214456266 | E069 | 39242 |
chr1 | 214381961 | 214382147 | E070 | -34677 |
chr1 | 214382313 | 214382401 | E070 | -34423 |
chr1 | 214382914 | 214383013 | E070 | -33811 |
chr1 | 214400894 | 214401126 | E070 | -15698 |
chr1 | 214401201 | 214401257 | E070 | -15567 |
chr1 | 214401412 | 214401519 | E070 | -15305 |
chr1 | 214451841 | 214451996 | E070 | 35017 |
chr1 | 214452180 | 214452452 | E070 | 35356 |
chr1 | 214456066 | 214456266 | E070 | 39242 |
chr1 | 214456477 | 214456714 | E070 | 39653 |
chr1 | 214382914 | 214383013 | E071 | -33811 |
chr1 | 214387349 | 214388054 | E071 | -28770 |
chr1 | 214401637 | 214401913 | E071 | -14911 |
chr1 | 214402220 | 214402344 | E071 | -14480 |
chr1 | 214402356 | 214402732 | E071 | -14092 |
chr1 | 214435576 | 214435692 | E071 | 18752 |
chr1 | 214456066 | 214456266 | E071 | 39242 |
chr1 | 214382914 | 214383013 | E072 | -33811 |
chr1 | 214456066 | 214456266 | E072 | 39242 |
chr1 | 214382313 | 214382401 | E073 | -34423 |
chr1 | 214387349 | 214388054 | E073 | -28770 |
chr1 | 214434761 | 214435468 | E073 | 17937 |
chr1 | 214382914 | 214383013 | E074 | -33811 |
chr1 | 214402220 | 214402344 | E074 | -14480 |
chr1 | 214402356 | 214402732 | E074 | -14092 |
chr1 | 214381961 | 214382147 | E081 | -34677 |
chr1 | 214387349 | 214388054 | E081 | -28770 |
chr1 | 214400894 | 214401126 | E081 | -15698 |
chr1 | 214401201 | 214401257 | E081 | -15567 |
chr1 | 214401412 | 214401519 | E081 | -15305 |
chr1 | 214401637 | 214401913 | E081 | -14911 |
chr1 | 214434761 | 214435468 | E081 | 17937 |
chr1 | 214435576 | 214435692 | E081 | 18752 |
chr1 | 214400894 | 214401126 | E082 | -15698 |
chr1 | 214401201 | 214401257 | E082 | -15567 |
chr1 | 214401412 | 214401519 | E082 | -15305 |
chr1 | 214401637 | 214401913 | E082 | -14911 |
chr1 | 214434761 | 214435468 | E082 | 17937 |
chr1 | 214435576 | 214435692 | E082 | 18752 |
chr1 | 214451841 | 214451996 | E082 | 35017 |
chr1 | 214456066 | 214456266 | E082 | 39242 |
chr1 | 214456477 | 214456714 | E082 | 39653 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr1 | 214397818 | 214398688 | E067 | -18136 |
chr1 | 214398769 | 214398829 | E067 | -17995 |
chr1 | 214453206 | 214455908 | E067 | 36382 |
chr1 | 214397818 | 214398688 | E068 | -18136 |
chr1 | 214398769 | 214398829 | E068 | -17995 |
chr1 | 214453206 | 214455908 | E068 | 36382 |
chr1 | 214397818 | 214398688 | E069 | -18136 |
chr1 | 214453206 | 214455908 | E069 | 36382 |
chr1 | 214397818 | 214398688 | E070 | -18136 |
chr1 | 214398769 | 214398829 | E070 | -17995 |
chr1 | 214453206 | 214455908 | E070 | 36382 |
chr1 | 214397818 | 214398688 | E071 | -18136 |
chr1 | 214398769 | 214398829 | E071 | -17995 |
chr1 | 214453206 | 214455908 | E071 | 36382 |
chr1 | 214397818 | 214398688 | E072 | -18136 |
chr1 | 214398769 | 214398829 | E072 | -17995 |
chr1 | 214453206 | 214455908 | E072 | 36382 |
chr1 | 214397818 | 214398688 | E073 | -18136 |
chr1 | 214453206 | 214455908 | E073 | 36382 |
chr1 | 214397818 | 214398688 | E074 | -18136 |
chr1 | 214453206 | 214455908 | E074 | 36382 |
chr1 | 214453206 | 214455908 | E081 | 36382 |
chr1 | 214397818 | 214398688 | E082 | -18136 |
chr1 | 214398769 | 214398829 | E082 | -17995 |
chr1 | 214453206 | 214455908 | E082 | 36382 |