SNP Detail Info-rs6677934

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0130 (3896/29968,GnomAD)
G=0161 (4701/29118,TOPMED)
G=0145 (724/5008,1000G)
G=0068 (263/3854,ALSPAC)
G=0073 (271/3708,TWINSUK)

Position: chr1:206615113 (GRCh38.p7) (1q32.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.727	G=0.273
1000Genomes	American	Sub	694	A=0.900	G=0.100
1000Genomes	East Asian	Sub	1008	A=0.944	G=0.056
1000Genomes	Europe	Sub	1006	A=0.926	G=0.074
1000Genomes	Global	Study-wide	5008	A=0.855	G=0.145
1000Genomes	South Asian	Sub	978	A=0.830	G=0.170
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.932	G=0.068
The Genome Aggregation Database	African	Sub	8722	A=0.762	G=0.238
The Genome Aggregation Database	American	Sub	838	A=0.880	G=0.120
The Genome Aggregation Database	East Asian	Sub	1618	A=0.933	G=0.067
The Genome Aggregation Database	Europe	Sub	18488	A=0.914	G=0.085
The Genome Aggregation Database	Global	Study-wide	29968	A=0.870	G=0.130
The Genome Aggregation Database	Other	Sub	302	A=0.890	G=0.110
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.838	G=0.161
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.927	G=0.073

PMID	Title	Author	Journal
22072270	Genome-wide association study identifies 5q21 and 9p24.1 (KDM4C) loci associated with alcohol withdrawal symptoms.	Wang KS	J Neural Transm (Vienna)

SNP ID	p-value	Traits	Study
rs6677934	8.11E-05	alcohol withdrawal symptoms	22072270

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs6677934