Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 1 | NC_000001.11:g.162361831A>G |
GRCh37.p13 chr 1 | NC_000001.10:g.162331621A>G |
NOS1AP RefSeqGene | NG_015979.1:g.297041A>G |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
NOS1AP transcript variant 3 | NM_001164757.1:c. | N/A | Intron Variant |
NOS1AP transcript variant 1 | NM_014697.2:c. | N/A | Intron Variant |
NOS1AP transcript variant 2 | NM_001126060.1:c. | N/A | Genic Upstream Transcript Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.896 | G=0.104 |
1000Genomes | American | Sub | 694 | A=0.600 | G=0.400 |
1000Genomes | East Asian | Sub | 1008 | A=0.455 | G=0.545 |
1000Genomes | Europe | Sub | 1006 | A=0.607 | G=0.393 |
1000Genomes | Global | Study-wide | 5008 | A=0.689 | G=0.311 |
1000Genomes | South Asian | Sub | 978 | A=0.790 | G=0.210 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.622 | G=0.378 |
The Genome Aggregation Database | African | Sub | 8706 | A=0.880 | G=0.120 |
The Genome Aggregation Database | American | Sub | 834 | A=0.580 | G=0.420 |
The Genome Aggregation Database | East Asian | Sub | 1616 | A=0.478 | G=0.522 |
The Genome Aggregation Database | Europe | Sub | 18428 | A=0.610 | G=0.389 |
The Genome Aggregation Database | Global | Study-wide | 29886 | A=0.682 | G=0.317 |
The Genome Aggregation Database | Other | Sub | 302 | A=0.730 | G=0.270 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.738 | G=0.261 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.641 | G=0.359 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs6681981 | 0.00057 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr1 | 162305025 | 162305275 | E067 | -26346 |
chr1 | 162289330 | 162289913 | E068 | -41708 |
chr1 | 162305025 | 162305275 | E069 | -26346 |
chr1 | 162304017 | 162304135 | E070 | -27486 |
chr1 | 162304758 | 162304825 | E070 | -26796 |
chr1 | 162305025 | 162305275 | E070 | -26346 |
chr1 | 162326728 | 162326823 | E070 | -4798 |
chr1 | 162327556 | 162327793 | E070 | -3828 |
chr1 | 162328402 | 162328580 | E070 | -3041 |
chr1 | 162330041 | 162330477 | E070 | -1144 |
chr1 | 162330840 | 162330976 | E070 | -645 |
chr1 | 162331337 | 162331394 | E070 | -227 |
chr1 | 162359750 | 162359829 | E070 | 28129 |
chr1 | 162359830 | 162359963 | E070 | 28209 |
chr1 | 162359984 | 162360123 | E070 | 28363 |
chr1 | 162361609 | 162361953 | E070 | 29988 |
chr1 | 162289330 | 162289913 | E071 | -41708 |
chr1 | 162294180 | 162294727 | E071 | -36894 |
chr1 | 162305025 | 162305275 | E071 | -26346 |
chr1 | 162361609 | 162361953 | E071 | 29988 |
chr1 | 162304758 | 162304825 | E072 | -26796 |
chr1 | 162305025 | 162305275 | E072 | -26346 |
chr1 | 162361609 | 162361953 | E072 | 29988 |
chr1 | 162289330 | 162289913 | E073 | -41708 |
chr1 | 162305025 | 162305275 | E073 | -26346 |
chr1 | 162323642 | 162323776 | E073 | -7845 |
chr1 | 162361609 | 162361953 | E073 | 29988 |
chr1 | 162305025 | 162305275 | E074 | -26346 |
chr1 | 162305025 | 162305275 | E081 | -26346 |
chr1 | 162330041 | 162330477 | E081 | -1144 |
chr1 | 162330840 | 162330976 | E081 | -645 |
chr1 | 162298461 | 162298567 | E082 | -33054 |