| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 1 | NC_000001.11:g.110854694A>G |
| GRCh37.p13 chr 1 | NC_000001.10:g.111397316A>G |
| OR11I1P pseudogene | NG_003221.2:g.696A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.828 | G=0.172 |
| 1000Genomes | American | Sub | 694 | A=0.710 | G=0.290 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.883 | G=0.117 |
| 1000Genomes | Europe | Sub | 1006 | A=0.723 | G=0.277 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.776 | G=0.224 |
| 1000Genomes | South Asian | Sub | 978 | A=0.700 | G=0.300 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.738 | G=0.262 |
| The Genome Aggregation Database | African | Sub | 8716 | A=0.817 | G=0.183 |
| The Genome Aggregation Database | American | Sub | 834 | A=0.690 | G=0.310 |
| The Genome Aggregation Database | East Asian | Sub | 1616 | A=0.879 | G=0.121 |
| The Genome Aggregation Database | Europe | Sub | 18456 | A=0.755 | G=0.244 |
| The Genome Aggregation Database | Global | Study-wide | 29924 | A=0.776 | G=0.223 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.610 | G=0.390 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.756 | G=0.243 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.732 | G=0.268 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs6687898 | 0.00015 | alcohol dependence(early age of onset) | 20201924 |
| rs6687898 | 0.00044 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue |
|---|---|---|---|---|---|---|
| Chr1:111397316 | CD53 | ENSG00000143119.8 | A>G | 1.5723e-7 | -18459 | Frontal_Cortex_BA9 |
| Chr1:111397316 | CD53 | ENSG00000143119.8 | A>G | 8.9309e-6 | -18459 | Cortex |
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr1 | 111413648 | 111414008 | E074 | 16332 |
| chr1 | 111414054 | 111414126 | E074 | 16738 |
| Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
|---|---|---|---|---|
| chr1 | 111416015 | 111416216 | E067 | 18699 |
| chr1 | 111416227 | 111416294 | E067 | 18911 |
| chr1 | 111416347 | 111416913 | E067 | 19031 |
| chr1 | 111416015 | 111416216 | E068 | 18699 |
| chr1 | 111416227 | 111416294 | E068 | 18911 |
| chr1 | 111416347 | 111416913 | E068 | 19031 |
| chr1 | 111416919 | 111417581 | E068 | 19603 |
| chr1 | 111417654 | 111418436 | E068 | 20338 |
| chr1 | 111416347 | 111416913 | E069 | 19031 |
| chr1 | 111415395 | 111415943 | E071 | 18079 |
| chr1 | 111416015 | 111416216 | E071 | 18699 |
| chr1 | 111416227 | 111416294 | E071 | 18911 |
| chr1 | 111416347 | 111416913 | E071 | 19031 |
| chr1 | 111416919 | 111417581 | E071 | 19603 |
| chr1 | 111417654 | 111418436 | E071 | 20338 |
| chr1 | 111418524 | 111418574 | E071 | 21208 |
| chr1 | 111416347 | 111416913 | E072 | 19031 |
| chr1 | 111416919 | 111417581 | E072 | 19603 |
| chr1 | 111417654 | 111418436 | E072 | 20338 |
| chr1 | 111418524 | 111418574 | E072 | 21208 |
| chr1 | 111416015 | 111416216 | E074 | 18699 |
| chr1 | 111416227 | 111416294 | E074 | 18911 |
| chr1 | 111416347 | 111416913 | E074 | 19031 |
| chr1 | 111417654 | 111418436 | E074 | 20338 |
| chr1 | 111418524 | 111418574 | E074 | 21208 |