rs6726894

Homo sapiens
C>A / C>G
SLC9A2 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0314 (9396/29912,GnomAD)
G=0294 (8570/29116,TOPMED)
G=0327 (1638/5008,1000G)
G=0383 (1476/3854,ALSPAC)
G=0377 (1397/3708,TWINSUK)
chr2:102680477 (GRCh38.p7) (2q12.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.102680477C>A
GRCh38.p7 chr 2NC_000002.12:g.102680477C>G
GRCh37.p13 chr 2NC_000002.11:g.103296936C>A
GRCh37.p13 chr 2NC_000002.11:g.103296936C>G

Gene: SLC9A2, solute carrier family 9 member A2(plus strand)

Molecule type Change Amino acid[Codon] SO Term
SLC9A2 transcriptNM_003048.4:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.879G=0.121
1000GenomesAmericanSub694C=0.640G=0.360
1000GenomesEast AsianSub1008C=0.563G=0.437
1000GenomesEuropeSub1006C=0.592G=0.408
1000GenomesGlobalStudy-wide5008C=0.673G=0.327
1000GenomesSouth AsianSub978C=0.610G=0.390
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.617G=0.383
The Genome Aggregation DatabaseAfricanSub8694C=0.817G=0.183
The Genome Aggregation DatabaseAmericanSub836C=0.670G=0.33,
The Genome Aggregation DatabaseEast AsianSub1618C=0.484G=0.516
The Genome Aggregation DatabaseEuropeSub18462C=0.644G=0.355
The Genome Aggregation DatabaseGlobalStudy-wide29912C=0.685G=0.314
The Genome Aggregation DatabaseOtherSub302C=0.590G=0.41,
Trans-Omics for Precision MedicineGlobalStudy-wide29116C=0.705G=0.294
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.623G=0.377
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs67268940.000101alcohol dependence21314694

eQTL of rs6726894 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6726894 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.