Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 3 | NC_000003.12:g.156290184G>A |
GRCh37.p13 chr 3 | NC_000003.11:g.156007973G>A |
KCNAB1 RefSeqGene | NG_042292.1:g.174637G>A |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
KCNAB1 transcript variant 4 | NM_001308217.1:c. | N/A | Intron Variant |
KCNAB1 transcript variant 2 | NM_003471.3:c. | N/A | Intron Variant |
KCNAB1 transcript variant 1 | NM_172160.2:c. | N/A | Intron Variant |
KCNAB1 transcript variant 5 | NM_001308222.1:c. | N/A | Genic Upstream Transcript Variant |
KCNAB1 transcript variant 3 | NM_172159.3:c. | N/A | Genic Upstream Transcript Variant |
KCNAB1 transcript variant X1 | XM_017007171.1:c. | N/A | Intron Variant |
KCNAB1 transcript variant X7 | XM_017007174.1:c. | N/A | Intron Variant |
KCNAB1 transcript variant X2 | XM_011513115.2:c. | N/A | Genic Upstream Transcript Variant |
KCNAB1 transcript variant X3 | XM_011513116.2:c. | N/A | Genic Upstream Transcript Variant |
KCNAB1 transcript variant X6 | XM_011513117.2:c. | N/A | Genic Upstream Transcript Variant |
KCNAB1 transcript variant X4 | XM_017007172.1:c. | N/A | Genic Upstream Transcript Variant |
KCNAB1 transcript variant X5 | XM_017007173.1:c. | N/A | Genic Upstream Transcript Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.895 | A=0.105 |
1000Genomes | American | Sub | 694 | G=1.000 | A=0.000 |
1000Genomes | East Asian | Sub | 1008 | G=1.000 | A=0.000 |
1000Genomes | Europe | Sub | 1006 | G=1.000 | A=0.000 |
1000Genomes | Global | Study-wide | 5008 | G=0.972 | A=0.028 |
1000Genomes | South Asian | Sub | 978 | G=1.000 | A=0.000 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=1.000 | A=0.000 |
The Genome Aggregation Database | African | Sub | 8712 | G=0.926 | A=0.074 |
The Genome Aggregation Database | American | Sub | 838 | G=1.000 | A=0.000 |
The Genome Aggregation Database | East Asian | Sub | 1620 | G=1.000 | A=0.000 |
The Genome Aggregation Database | Europe | Sub | 18510 | G=0.999 | A=0.000 |
The Genome Aggregation Database | Global | Study-wide | 29982 | G=0.978 | A=0.021 |
The Genome Aggregation Database | Other | Sub | 302 | G=1.000 | A=0.000 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.966 | A=0.033 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=1.000 | A=0.000 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs6767209 | 0.000955 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr3 | 155964768 | 155965042 | E067 | -42931 |
chr3 | 155990970 | 155991336 | E067 | -16637 |
chr3 | 156017012 | 156017359 | E067 | 9039 |
chr3 | 156017389 | 156017704 | E067 | 9416 |
chr3 | 156018325 | 156018426 | E067 | 10352 |
chr3 | 156021273 | 156021344 | E067 | 13300 |
chr3 | 156021451 | 156021584 | E067 | 13478 |
chr3 | 156038567 | 156038760 | E067 | 30594 |
chr3 | 156038982 | 156039250 | E067 | 31009 |
chr3 | 156039747 | 156039833 | E067 | 31774 |
chr3 | 156039887 | 156039965 | E067 | 31914 |
chr3 | 155990970 | 155991336 | E068 | -16637 |
chr3 | 156006967 | 156007019 | E068 | -954 |
chr3 | 156016857 | 156016996 | E068 | 8884 |
chr3 | 156017012 | 156017359 | E068 | 9039 |
chr3 | 156017389 | 156017704 | E068 | 9416 |
chr3 | 156018325 | 156018426 | E068 | 10352 |
chr3 | 156021273 | 156021344 | E068 | 13300 |
chr3 | 156021451 | 156021584 | E068 | 13478 |
chr3 | 156021978 | 156022045 | E068 | 14005 |
chr3 | 156022166 | 156022546 | E068 | 14193 |
chr3 | 156037543 | 156037604 | E068 | 29570 |
chr3 | 156038039 | 156038296 | E068 | 30066 |
chr3 | 156038567 | 156038760 | E068 | 30594 |
chr3 | 156038982 | 156039250 | E068 | 31009 |
chr3 | 156039747 | 156039833 | E068 | 31774 |
chr3 | 156039887 | 156039965 | E068 | 31914 |
chr3 | 155964768 | 155965042 | E069 | -42931 |
chr3 | 155975904 | 155976059 | E069 | -31914 |
chr3 | 156016857 | 156016996 | E069 | 8884 |
chr3 | 156017012 | 156017359 | E069 | 9039 |
chr3 | 156017389 | 156017704 | E069 | 9416 |
chr3 | 156020922 | 156020972 | E069 | 12949 |
chr3 | 156021273 | 156021344 | E069 | 13300 |
chr3 | 156021451 | 156021584 | E069 | 13478 |
chr3 | 156037543 | 156037604 | E069 | 29570 |
chr3 | 156038039 | 156038296 | E069 | 30066 |
chr3 | 156038567 | 156038760 | E069 | 30594 |
chr3 | 156038982 | 156039250 | E069 | 31009 |
chr3 | 156039747 | 156039833 | E069 | 31774 |
chr3 | 156039887 | 156039965 | E069 | 31914 |
chr3 | 155964768 | 155965042 | E071 | -42931 |
chr3 | 155965264 | 155965388 | E071 | -42585 |
chr3 | 155967465 | 155967623 | E071 | -40350 |
chr3 | 155990229 | 155990308 | E071 | -17665 |
chr3 | 155990970 | 155991336 | E071 | -16637 |
chr3 | 156016857 | 156016996 | E071 | 8884 |
chr3 | 156017012 | 156017359 | E071 | 9039 |
chr3 | 156017389 | 156017704 | E071 | 9416 |
chr3 | 156018325 | 156018426 | E071 | 10352 |
chr3 | 156020922 | 156020972 | E071 | 12949 |
chr3 | 156021273 | 156021344 | E071 | 13300 |
chr3 | 156021451 | 156021584 | E071 | 13478 |
chr3 | 156037543 | 156037604 | E071 | 29570 |
chr3 | 156038039 | 156038296 | E071 | 30066 |
chr3 | 156038567 | 156038760 | E071 | 30594 |
chr3 | 156039747 | 156039833 | E071 | 31774 |
chr3 | 156039887 | 156039965 | E071 | 31914 |
chr3 | 155972336 | 155972604 | E072 | -35369 |
chr3 | 156021451 | 156021584 | E072 | 13478 |
chr3 | 156038039 | 156038296 | E072 | 30066 |
chr3 | 156038567 | 156038760 | E072 | 30594 |
chr3 | 156038982 | 156039250 | E072 | 31009 |
chr3 | 156039747 | 156039833 | E072 | 31774 |
chr3 | 156039887 | 156039965 | E072 | 31914 |
chr3 | 155990970 | 155991336 | E073 | -16637 |
chr3 | 156016857 | 156016996 | E073 | 8884 |
chr3 | 156017012 | 156017359 | E073 | 9039 |
chr3 | 156017389 | 156017704 | E073 | 9416 |
chr3 | 156018325 | 156018426 | E073 | 10352 |
chr3 | 156021451 | 156021584 | E073 | 13478 |
chr3 | 156038039 | 156038296 | E073 | 30066 |
chr3 | 156038567 | 156038760 | E073 | 30594 |
chr3 | 155964768 | 155965042 | E074 | -42931 |
chr3 | 155990970 | 155991336 | E074 | -16637 |
chr3 | 156020922 | 156020972 | E074 | 12949 |
chr3 | 156021273 | 156021344 | E074 | 13300 |
chr3 | 156021451 | 156021584 | E074 | 13478 |
chr3 | 156037543 | 156037604 | E074 | 29570 |
chr3 | 156038039 | 156038296 | E074 | 30066 |
chr3 | 156038567 | 156038760 | E074 | 30594 |
chr3 | 156038982 | 156039250 | E074 | 31009 |
chr3 | 156039747 | 156039833 | E074 | 31774 |
chr3 | 156039887 | 156039965 | E074 | 31914 |
chr3 | 155964768 | 155965042 | E081 | -42931 |
chr3 | 156015532 | 156015627 | E081 | 7559 |
chr3 | 156015940 | 156016001 | E081 | 7967 |
chr3 | 156016857 | 156016996 | E081 | 8884 |
chr3 | 156017012 | 156017359 | E081 | 9039 |
chr3 | 156017389 | 156017704 | E081 | 9416 |
chr3 | 156018325 | 156018426 | E081 | 10352 |
chr3 | 156016857 | 156016996 | E082 | 8884 |
chr3 | 156018325 | 156018426 | E082 | 10352 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr3 | 156008680 | 156009914 | E067 | 707 |
chr3 | 156011461 | 156011516 | E067 | 3488 |
chr3 | 156008680 | 156009914 | E068 | 707 |
chr3 | 156011461 | 156011516 | E068 | 3488 |
chr3 | 156008680 | 156009914 | E069 | 707 |
chr3 | 156011461 | 156011516 | E069 | 3488 |
chr3 | 156008680 | 156009914 | E070 | 707 |
chr3 | 156008680 | 156009914 | E071 | 707 |
chr3 | 156011461 | 156011516 | E071 | 3488 |
chr3 | 156008680 | 156009914 | E072 | 707 |
chr3 | 156011461 | 156011516 | E072 | 3488 |
chr3 | 156008680 | 156009914 | E073 | 707 |
chr3 | 156011461 | 156011516 | E073 | 3488 |
chr3 | 156008680 | 156009914 | E074 | 707 |
chr3 | 156008680 | 156009914 | E081 | 707 |
chr3 | 156008680 | 156009914 | E082 | 707 |