rs6773354

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0135 (4052/29964,GnomAD)
T=0127 (3698/29118,TOPMED)
T=0212 (1064/5008,1000G)
T=0140 (541/3854,ALSPAC)
T=0143 (530/3708,TWINSUK)
chr3:133822930 (GRCh38.p7) (3q22.1)
AD
GWASdb2
1   publication(s)
See rs on genome
126 Enhancers around
19 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.133822930C>T
GRCh37.p13 chr 3NC_000003.11:g.133541774C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.976T=0.024
1000GenomesAmericanSub694C=0.730T=0.270
1000GenomesEast AsianSub1008C=0.569T=0.431
1000GenomesEuropeSub1006C=0.828T=0.172
1000GenomesGlobalStudy-wide5008C=0.788T=0.212
1000GenomesSouth AsianSub978C=0.750T=0.250
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.860T=0.140
The Genome Aggregation DatabaseAfricanSub8726C=0.954T=0.046
The Genome Aggregation DatabaseAmericanSub834C=0.650T=0.350
The Genome Aggregation DatabaseEast AsianSub1614C=0.571T=0.429
The Genome Aggregation DatabaseEuropeSub18488C=0.858T=0.141
The Genome Aggregation DatabaseGlobalStudy-wide29964C=0.864T=0.135
The Genome Aggregation DatabaseOtherSub302C=0.850T=0.150
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.873T=0.127
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.857T=0.143
PMID Title Author Journal
21665994Genome-wide association study identifies two loci strongly affecting transferrin glycosylation.Kutalik ZHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs67733542.29E-09alcohol consumption21665994

eQTL of rs6773354 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6773354 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3133562885133562960E06721111
chr3133573215133573347E06731441
chr3133573885133574171E06732111
chr3133574725133574824E06732951
chr3133575303133575377E06733529
chr3133584047133584242E06742273
chr3133587242133587401E06745468
chr3133587644133588157E06745870
chr3133588170133588246E06746396
chr3133590458133590539E06748684
chr3133591508133591609E06749734
chr3133572273133572376E06830499
chr3133572430133572579E06830656
chr3133572588133572638E06830814
chr3133573215133573347E06831441
chr3133573885133574171E06832111
chr3133574725133574824E06832951
chr3133575303133575377E06833529
chr3133584047133584242E06842273
chr3133587242133587401E06845468
chr3133587644133588157E06845870
chr3133588170133588246E06846396
chr3133590458133590539E06848684
chr3133591508133591609E06849734
chr3133540603133541021E069-753
chr3133541191133541245E069-529
chr3133572273133572376E06930499
chr3133572430133572579E06930656
chr3133572588133572638E06930814
chr3133573215133573347E06931441
chr3133573885133574171E06932111
chr3133574725133574824E06932951
chr3133575303133575377E06933529
chr3133584047133584242E06942273
chr3133587242133587401E06945468
chr3133587644133588157E06945870
chr3133588170133588246E06946396
chr3133590458133590539E06948684
chr3133591508133591609E06949734
chr3133547093133547193E0705319
chr3133547516133547745E0705742
chr3133547924133548172E0706150
chr3133572273133572376E07030499
chr3133572430133572579E07030656
chr3133572588133572638E07030814
chr3133573215133573347E07031441
chr3133573885133574171E07032111
chr3133574725133574824E07032951
chr3133575303133575377E07033529
chr3133587242133587401E07045468
chr3133587644133588157E07045870
chr3133540337133540417E071-1357
chr3133572273133572376E07130499
chr3133572430133572579E07130656
chr3133572588133572638E07130814
chr3133573215133573347E07131441
chr3133573885133574171E07132111
chr3133574725133574824E07132951
chr3133582903133583150E07141129
chr3133584047133584242E07142273
chr3133587242133587401E07145468
chr3133587644133588157E07145870
chr3133588170133588246E07146396
chr3133573215133573347E07231441
chr3133573885133574171E07232111
chr3133574725133574824E07232951
chr3133582298133582380E07240524
chr3133584047133584242E07242273
chr3133587242133587401E07245468
chr3133587644133588157E07245870
chr3133588170133588246E07246396
chr3133590458133590539E07248684
chr3133591508133591609E07249734
chr3133540006133540074E073-1700
chr3133540337133540417E073-1357
chr3133540603133541021E073-753
chr3133541035133541081E073-693
chr3133541191133541245E073-529
chr3133572273133572376E07330499
chr3133573215133573347E07331441
chr3133573885133574171E07332111
chr3133574725133574824E07332951
chr3133575303133575377E07333529
chr3133584047133584242E07342273
chr3133587242133587401E07345468
chr3133587644133588157E07345870
chr3133588170133588246E07346396
chr3133590458133590539E07348684
chr3133591508133591609E07349734
chr3133540006133540074E074-1700
chr3133540337133540417E074-1357
chr3133540603133541021E074-753
chr3133541035133541081E074-693
chr3133541191133541245E074-529
chr3133541431133541497E074-277
chr3133541623133541762E074-12
chr3133541910133541964E074136
chr3133572430133572579E07430656
chr3133572588133572638E07430814
chr3133573215133573347E07431441
chr3133573885133574171E07432111
chr3133574725133574824E07432951
chr3133587242133587401E07445468
chr3133587644133588157E07445870
chr3133588170133588246E07446396
chr3133526132133526214E081-15560
chr3133572273133572376E08130499
chr3133573215133573347E08131441
chr3133573885133574171E08132111
chr3133574725133574824E08132951
chr3133587242133587401E08145468
chr3133588170133588246E08146396
chr3133591508133591609E08149734
chr3133547516133547745E0825742
chr3133547924133548172E0826150
chr3133548284133548391E0826510
chr3133572273133572376E08230499
chr3133572430133572579E08230656
chr3133572588133572638E08230814
chr3133573215133573347E08231441
chr3133573885133574171E08232111
chr3133574725133574824E08232951
chr3133575303133575377E08233529
chr3133587242133587401E08245468
chr3133587644133588157E08245870
chr3133588170133588246E08246396










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr3133524082133525550E067-16224
chr3133525588133525634E067-16140
chr3133524082133525550E068-16224
chr3133525588133525634E068-16140
chr3133524082133525550E069-16224
chr3133524082133525550E070-16224
chr3133525588133525634E070-16140
chr3133524082133525550E071-16224
chr3133525588133525634E071-16140
chr3133524082133525550E072-16224
chr3133525588133525634E072-16140
chr3133524082133525550E073-16224
chr3133525588133525634E073-16140
chr3133524082133525550E074-16224
chr3133525588133525634E074-16140
chr3133524082133525550E081-16224
chr3133525588133525634E081-16140
chr3133524082133525550E082-16224
chr3133525588133525634E082-16140