rs6777876

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0097 (2917/29882,GnomAD)
G=0092 (2704/29118,TOPMED)
G=0085 (425/5008,1000G)
G=0118 (454/3854,ALSPAC)
G=0118 (437/3708,TWINSUK)
chr3:11915124 (GRCh38.p7) (3p25.2)
AD
GWASdb2 | GWASCatalog
1   publication(s)
See rs on genome
60 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.11915124A>G
GRCh37.p13 chr 3 novel patch HSCHR3_1_CTG1NW_003871060.1:g.71374T>C
GRCh38.p7 chr 3 alt locus HSCHR3_1_CTG1NW_003871060.2:g.71374T>C
GRCh37.p13 chr 3NC_000003.11:g.11956598A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.930G=0.070
1000GenomesAmericanSub694A=0.950G=0.050
1000GenomesEast AsianSub1008A=0.950G=0.050
1000GenomesEuropeSub1006A=0.901G=0.099
1000GenomesGlobalStudy-wide5008A=0.915G=0.085
1000GenomesSouth AsianSub978A=0.850G=0.150
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.882G=0.118
The Genome Aggregation DatabaseAfricanSub8688A=0.917G=0.083
The Genome Aggregation DatabaseAmericanSub838A=0.950G=0.050
The Genome Aggregation DatabaseEast AsianSub1620A=0.938G=0.062
The Genome Aggregation DatabaseEuropeSub18434A=0.890G=0.110
The Genome Aggregation DatabaseGlobalStudy-wide29882A=0.902G=0.097
The Genome Aggregation DatabaseOtherSub302A=0.930G=0.070
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.907G=0.092
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.882G=0.118
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs67778764E-07alcohol dependence21314694

eQTL of rs6777876 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6777876 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3104810105451E06733436
chr3114174114280E06742800
chr3114437114799E06743063
chr3114174114280E06842800
chr3114437114799E06843063
chr3114802115003E06843428
chr3115137115254E06843763
chr3115361115440E06843987
chr3104810105451E06933436
chr3105525105633E06934151
chr3114174114280E06942800
chr3114437114799E06943063
chr3114802115003E06943428
chr3115137115254E06943763
chr3115361115440E06943987
chr3114174114280E07042800
chr3114437114799E07043063
chr3114802115003E07043428
chr3115137115254E07043763
chr3115361115440E07043987
chr3116283116363E07044909
chr3116414116901E07045040
chr3117032117204E07045658
chr3117319117416E07045945
chr3117466117544E07046092
chr3104810105451E07133436
chr3105525105633E07134151
chr3114174114280E07142800
chr3114437114799E07143063
chr3114802115003E07143428
chr3115137115254E07143763
chr3105525105633E07234151
chr3114174114280E07242800
chr3114437114799E07243063
chr3114802115003E07243428
chr3115137115254E07243763
chr3115361115440E07243987
chr3111467111643E07440093
chr3114437114799E07443063
chr3114802115003E07443428
chr3115137115254E07443763
chr3115361115440E07443987
chr38431584369E08112941
chr38610586168E08114731
chr3104810105451E08133436
chr3105525105633E08134151
chr3114437114799E08143063
chr3114802115003E08143428
chr3115137115254E08143763
chr3115361115440E08143987
chr38431584369E08212941
chr3104810105451E08233436
chr3105525105633E08234151
chr3114437114799E08243063
chr3114802115003E08243428
chr3115137115254E08243763
chr3115361115440E08243987
chr3117032117204E08245658
chr3117319117416E08245945
chr3117466117544E08246092