rs6778062

Homo sapiens
G>C
None
Check p-value
SNV (Single Nucleotide Variation)
G==0334 (10023/29926,GnomAD)
G==0323 (9417/29118,TOPMED)
G==0242 (1214/5008,1000G)
G==0354 (1365/3854,ALSPAC)
G==0374 (1386/3708,TWINSUK)
chr3:133548309 (GRCh38.p7) (3q22.1)
AD
GWASdb2
1   publication(s)
See rs on genome
29 Enhancers around
12 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.133548309G>C
GRCh37.p13 chr 3NC_000003.11:g.133267153G>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.309C=0.691
1000GenomesAmericanSub694G=0.280C=0.720
1000GenomesEast AsianSub1008G=0.128C=0.872
1000GenomesEuropeSub1006G=0.327C=0.673
1000GenomesGlobalStudy-wide5008G=0.242C=0.758
1000GenomesSouth AsianSub978G=0.160C=0.840
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.354C=0.646
The Genome Aggregation DatabaseAfricanSub8702G=0.323C=0.677
The Genome Aggregation DatabaseAmericanSub838G=0.240C=0.760
The Genome Aggregation DatabaseEast AsianSub1618G=0.118C=0.882
The Genome Aggregation DatabaseEuropeSub18468G=0.363C=0.636
The Genome Aggregation DatabaseGlobalStudy-wide29926G=0.334C=0.665
The Genome Aggregation DatabaseOtherSub300G=0.360C=0.640
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.323C=0.676
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.374C=0.626
PMID Title Author Journal
21665994Genome-wide association study identifies two loci strongly affecting transferrin glycosylation.Kutalik ZHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs67780621.28E-08alcohol consumption21665994

eQTL of rs6778062 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6778062 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3133254911133255817E067-11336
chr3133297382133297726E06730229
chr3133254911133255817E068-11336
chr3133254911133255817E069-11336
chr3133296654133296726E06929501
chr3133296755133296862E06929602
chr3133297034133297084E06929881
chr3133297382133297726E06930229
chr3133254911133255817E070-11336
chr3133297382133297726E07030229
chr3133297382133297726E07130229
chr3133289963133290140E07222810
chr3133297382133297726E07230229
chr3133296654133296726E07329501
chr3133296755133296862E07329602
chr3133297034133297084E07329881
chr3133297382133297726E07330229
chr3133314061133314138E07346908
chr3133314324133314490E07347171
chr3133314501133314644E07347348
chr3133254911133255817E074-11336
chr3133296654133296726E07429501
chr3133296755133296862E07429602
chr3133297034133297084E07429881
chr3133297382133297726E07430229
chr3133296755133296862E08129602
chr3133297034133297084E08129881
chr3133297382133297726E08130229
chr3133297382133297726E08230229










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr3133291220133294288E06724067
chr3133291220133294288E06824067
chr3133291220133294288E06924067
chr3133291220133294288E07024067
chr3133294433133294485E07027280
chr3133291220133294288E07124067
chr3133294433133294485E07127280
chr3133291220133294288E07224067
chr3133291220133294288E07324067
chr3133291220133294288E07424067
chr3133291220133294288E08224067
chr3133294433133294485E08227280