Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 3 | NC_000003.12:g.133548309G>C |
GRCh37.p13 chr 3 | NC_000003.11:g.133267153G>C |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.309 | C=0.691 |
1000Genomes | American | Sub | 694 | G=0.280 | C=0.720 |
1000Genomes | East Asian | Sub | 1008 | G=0.128 | C=0.872 |
1000Genomes | Europe | Sub | 1006 | G=0.327 | C=0.673 |
1000Genomes | Global | Study-wide | 5008 | G=0.242 | C=0.758 |
1000Genomes | South Asian | Sub | 978 | G=0.160 | C=0.840 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.354 | C=0.646 |
The Genome Aggregation Database | African | Sub | 8702 | G=0.323 | C=0.677 |
The Genome Aggregation Database | American | Sub | 838 | G=0.240 | C=0.760 |
The Genome Aggregation Database | East Asian | Sub | 1618 | G=0.118 | C=0.882 |
The Genome Aggregation Database | Europe | Sub | 18468 | G=0.363 | C=0.636 |
The Genome Aggregation Database | Global | Study-wide | 29926 | G=0.334 | C=0.665 |
The Genome Aggregation Database | Other | Sub | 300 | G=0.360 | C=0.640 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.323 | C=0.676 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.374 | C=0.626 |
PMID | Title | Author | Journal |
---|---|---|---|
21665994 | Genome-wide association study identifies two loci strongly affecting transferrin glycosylation. | Kutalik Z | Hum Mol Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs6778062 | 1.28E-08 | alcohol consumption | 21665994 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr3 | 133254911 | 133255817 | E067 | -11336 |
chr3 | 133297382 | 133297726 | E067 | 30229 |
chr3 | 133254911 | 133255817 | E068 | -11336 |
chr3 | 133254911 | 133255817 | E069 | -11336 |
chr3 | 133296654 | 133296726 | E069 | 29501 |
chr3 | 133296755 | 133296862 | E069 | 29602 |
chr3 | 133297034 | 133297084 | E069 | 29881 |
chr3 | 133297382 | 133297726 | E069 | 30229 |
chr3 | 133254911 | 133255817 | E070 | -11336 |
chr3 | 133297382 | 133297726 | E070 | 30229 |
chr3 | 133297382 | 133297726 | E071 | 30229 |
chr3 | 133289963 | 133290140 | E072 | 22810 |
chr3 | 133297382 | 133297726 | E072 | 30229 |
chr3 | 133296654 | 133296726 | E073 | 29501 |
chr3 | 133296755 | 133296862 | E073 | 29602 |
chr3 | 133297034 | 133297084 | E073 | 29881 |
chr3 | 133297382 | 133297726 | E073 | 30229 |
chr3 | 133314061 | 133314138 | E073 | 46908 |
chr3 | 133314324 | 133314490 | E073 | 47171 |
chr3 | 133314501 | 133314644 | E073 | 47348 |
chr3 | 133254911 | 133255817 | E074 | -11336 |
chr3 | 133296654 | 133296726 | E074 | 29501 |
chr3 | 133296755 | 133296862 | E074 | 29602 |
chr3 | 133297034 | 133297084 | E074 | 29881 |
chr3 | 133297382 | 133297726 | E074 | 30229 |
chr3 | 133296755 | 133296862 | E081 | 29602 |
chr3 | 133297034 | 133297084 | E081 | 29881 |
chr3 | 133297382 | 133297726 | E081 | 30229 |
chr3 | 133297382 | 133297726 | E082 | 30229 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr3 | 133291220 | 133294288 | E067 | 24067 |
chr3 | 133291220 | 133294288 | E068 | 24067 |
chr3 | 133291220 | 133294288 | E069 | 24067 |
chr3 | 133291220 | 133294288 | E070 | 24067 |
chr3 | 133294433 | 133294485 | E070 | 27280 |
chr3 | 133291220 | 133294288 | E071 | 24067 |
chr3 | 133294433 | 133294485 | E071 | 27280 |
chr3 | 133291220 | 133294288 | E072 | 24067 |
chr3 | 133291220 | 133294288 | E073 | 24067 |
chr3 | 133291220 | 133294288 | E074 | 24067 |
chr3 | 133291220 | 133294288 | E082 | 24067 |
chr3 | 133294433 | 133294485 | E082 | 27280 |