rs6779599

Homo sapiens
C>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0139 (4186/29938,GnomAD)
A=0137 (3990/29118,TOPMED)
A=0145 (726/5008,1000G)
A=0162 (625/3854,ALSPAC)
A=0171 (633/3708,TWINSUK)
chr3:192130010 (GRCh38.p7) (3q28)
AD
GWASdb2
1   publication(s)
See rs on genome
2 Enhancers around
3 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.192130010C>A
GRCh37.p13 chr 3NC_000003.11:g.191847799C>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.877A=0.123
1000GenomesAmericanSub694C=0.900A=0.100
1000GenomesEast AsianSub1008C=0.875A=0.125
1000GenomesEuropeSub1006C=0.841A=0.159
1000GenomesGlobalStudy-wide5008C=0.855A=0.145
1000GenomesSouth AsianSub978C=0.790A=0.210
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.838A=0.162
The Genome Aggregation DatabaseAfricanSub8716C=0.875A=0.125
The Genome Aggregation DatabaseAmericanSub836C=0.910A=0.090
The Genome Aggregation DatabaseEast AsianSub1606C=0.869A=0.131
The Genome Aggregation DatabaseEuropeSub18478C=0.850A=0.149
The Genome Aggregation DatabaseGlobalStudy-wide29938C=0.860A=0.139
The Genome Aggregation DatabaseOtherSub302C=0.860A=0.140
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.863A=0.137
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.829A=0.171
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs67795990.000198alcohol dependence21314694

eQTL of rs6779599 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6779599 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3191880309191880444E07032510
chr3191895219191895289E08247420


Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr3191873100191873303E07125301
chr3191873100191873303E07225301
chr3191873100191873303E07325301