rs6785365

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
A==0360 (10675/29586,GnomAD)
A==0349 (10183/29118,TOPMED)
A==0251 (1256/5008,1000G)
A==0348 (1341/3854,ALSPAC)
A==0380 (1408/3708,TWINSUK)
chr3:133543601 (GRCh38.p7) (3q22.1)
AD
GWASdb2
1   publication(s)
See rs on genome
26 Enhancers around
12 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.133543601A>G
GRCh37.p13 chr 3NC_000003.11:g.133262445A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.343G=0.657
1000GenomesAmericanSub694A=0.270G=0.730
1000GenomesEast AsianSub1008A=0.131G=0.869
1000GenomesEuropeSub1006A=0.318G=0.682
1000GenomesGlobalStudy-wide5008A=0.251G=0.749
1000GenomesSouth AsianSub978A=0.170G=0.830
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.348G=0.652
The Genome Aggregation DatabaseAfricanSub8600A=0.367G=0.633
The Genome Aggregation DatabaseAmericanSub826A=0.230G=0.770
The Genome Aggregation DatabaseEast AsianSub1598A=0.121G=0.879
The Genome Aggregation DatabaseEuropeSub18262A=0.384G=0.615
The Genome Aggregation DatabaseGlobalStudy-wide29586A=0.360G=0.639
The Genome Aggregation DatabaseOtherSub300A=0.400G=0.600
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.349G=0.650
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.380G=0.620
PMID Title Author Journal
21665994Genome-wide association study identifies two loci strongly affecting transferrin glycosylation.Kutalik ZHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs67853654.64E-07alcohol consumption21665994

eQTL of rs6785365 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6785365 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3133254911133255817E067-6628
chr3133297382133297726E06734937
chr3133254911133255817E068-6628
chr3133254911133255817E069-6628
chr3133296654133296726E06934209
chr3133296755133296862E06934310
chr3133297034133297084E06934589
chr3133297382133297726E06934937
chr3133254911133255817E070-6628
chr3133297382133297726E07034937
chr3133297382133297726E07134937
chr3133289963133290140E07227518
chr3133297382133297726E07234937
chr3133296654133296726E07334209
chr3133296755133296862E07334310
chr3133297034133297084E07334589
chr3133297382133297726E07334937
chr3133254911133255817E074-6628
chr3133296654133296726E07434209
chr3133296755133296862E07434310
chr3133297034133297084E07434589
chr3133297382133297726E07434937
chr3133296755133296862E08134310
chr3133297034133297084E08134589
chr3133297382133297726E08134937
chr3133297382133297726E08234937










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr3133291220133294288E06728775
chr3133291220133294288E06828775
chr3133291220133294288E06928775
chr3133291220133294288E07028775
chr3133294433133294485E07031988
chr3133291220133294288E07128775
chr3133294433133294485E07131988
chr3133291220133294288E07228775
chr3133291220133294288E07328775
chr3133291220133294288E07428775
chr3133291220133294288E08228775
chr3133294433133294485E08231988