rs6788557

Homo sapiens
C>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0229 (6787/29568,GnomAD)
G=0318 (9273/29118,TOPMED)
G=0241 (1207/5008,1000G)
G=0105 (403/3854,ALSPAC)
G=0109 (404/3708,TWINSUK)
chr3:164870600 (GRCh38.p7) (3q26.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.164870600C>G
GRCh37.p13 chr 3NC_000003.11:g.164588388C>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.382G=0.618
1000GenomesAmericanSub694C=0.900G=0.100
1000GenomesEast AsianSub1008C=0.906G=0.094
1000GenomesEuropeSub1006C=0.904G=0.096
1000GenomesGlobalStudy-wide5008C=0.759G=0.241
1000GenomesSouth AsianSub978C=0.870G=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.895G=0.105
The Genome Aggregation DatabaseAfricanSub8574C=0.428G=0.572
The Genome Aggregation DatabaseAmericanSub826C=0.920G=0.080
The Genome Aggregation DatabaseEast AsianSub1606C=0.900G=0.100
The Genome Aggregation DatabaseEuropeSub18260C=0.910G=0.089
The Genome Aggregation DatabaseGlobalStudy-wide29568C=0.770G=0.229
The Genome Aggregation DatabaseOtherSub302C=0.900G=0.100
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.681G=0.318
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.891G=0.109
PMID Title Author Journal
24962325Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.Kapoor MDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs67885574.99E-09alcohol dependence (age at onset)24962325

eQTL of rs6788557 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6788557 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.