rs679210

Homo sapiens
A>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0253 (7563/29876,GnomAD)
C=0254 (7422/29118,TOPMED)
C=0249 (1247/5008,1000G)
C=0277 (1068/3854,ALSPAC)
C=0270 (1001/3708,TWINSUK)
chr17:77049901 (GRCh38.p7) (17q25.2)
AD
GWASdb2
1   publication(s)
See rs on genome
144 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 17NC_000017.11:g.77049901A>C
GRCh37.p13 chr 17NC_000017.10:g.75045983A>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.761C=0.239
1000GenomesAmericanSub694A=0.780C=0.220
1000GenomesEast AsianSub1008A=0.806C=0.194
1000GenomesEuropeSub1006A=0.687C=0.313
1000GenomesGlobalStudy-wide5008A=0.751C=0.249
1000GenomesSouth AsianSub978A=0.730C=0.270
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.723C=0.277
The Genome Aggregation DatabaseAfricanSub8704A=0.752C=0.248
The Genome Aggregation DatabaseAmericanSub838A=0.810C=0.190
The Genome Aggregation DatabaseEast AsianSub1614A=0.787C=0.213
The Genome Aggregation DatabaseEuropeSub18418A=0.741C=0.258
The Genome Aggregation DatabaseGlobalStudy-wide29876A=0.746C=0.253
The Genome Aggregation DatabaseOtherSub302A=0.530C=0.470
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.745C=0.254
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.730C=0.270
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs6792101.1E-06alcoholism (heaviness of drinking)21529783

eQTL of rs679210 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs679210 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr177502942075029506E067-16477
chr177503349875033727E067-12256
chr177503382975033879E067-12104
chr177508208275083099E06736099
chr177508602975086093E06740046
chr177508619775086260E06740214
chr177509238275092422E06746399
chr177509249575093378E06746512
chr177509373775094210E06747754
chr177509450875095501E06748525
chr177509551575095582E06749532
chr177509563675095737E06749653
chr177509579275095928E06749809
chr177503382975033879E068-12104
chr177503407375034127E068-11856
chr177503418975034374E068-11609
chr177508208275083099E06836099
chr177508643175086517E06840448
chr177508662975086888E06840646
chr177509249575093378E06846512
chr177509373775094210E06847754
chr177509450875095501E06848525
chr177509551575095582E06849532
chr177509563675095737E06849653
chr177509579275095928E06849809
chr177503349875033727E069-12256
chr177503382975033879E069-12104
chr177503407375034127E069-11856
chr177503418975034374E069-11609
chr177508208275083099E06936099
chr177508386775084039E06937884
chr177508602975086093E06940046
chr177508619775086260E06940214
chr177508643175086517E06940448
chr177508662975086888E06940646
chr177508693875087027E06940955
chr177508750675087713E06941523
chr177508806675088126E06942083
chr177508826475088318E06942281
chr177508833775088404E06942354
chr177509249575093378E06946512
chr177509373775094210E06947754
chr177509450875095501E06948525
chr177509551575095582E06949532
chr177509563675095737E06949653
chr177509579275095928E06949809
chr177499826074998803E070-47180
chr177503228875032425E070-13558
chr177503266175032761E070-13222
chr177503407375034127E070-11856
chr177503418975034374E070-11609
chr177505220075052883E0706217
chr177505788675058088E07011903
chr177506713275067195E07021149
chr177508602975086093E07040046
chr177508619775086260E07040214
chr177505202075052082E0716037
chr177508316275083226E07137179
chr177508323275083314E07137249
chr177508368775083810E07137704
chr177508619775086260E07140214
chr177508643175086517E07140448
chr177508662975086888E07140646
chr177508693875087027E07140955
chr177508750675087713E07141523
chr177509238275092422E07146399
chr177509249575093378E07146512
chr177509373775094210E07147754
chr177509563675095737E07149653
chr177509579275095928E07149809
chr177503266175032761E072-13222
chr177503349875033727E072-12256
chr177503382975033879E072-12104
chr177503407375034127E072-11856
chr177508208275083099E07236099
chr177508386775084039E07237884
chr177508602975086093E07240046
chr177508619775086260E07240214
chr177508643175086517E07240448
chr177508826475088318E07242281
chr177508833775088404E07242354
chr177508848675088581E07242503
chr177509373775094210E07247754
chr177509450875095501E07248525
chr177509551575095582E07249532
chr177509563675095737E07249653
chr177509579275095928E07249809
chr177503145775031622E073-14361
chr177503218775032237E073-13746
chr177503228875032425E073-13558
chr177503266175032761E073-13222
chr177503382975033879E073-12104
chr177508368775083810E07337704
chr177508386775084039E07337884
chr177508643175086517E07340448
chr177508662975086888E07340646
chr177508693875087027E07340955
chr177508750675087713E07341523
chr177508806675088126E07342083
chr177508826475088318E07342281
chr177508833775088404E07342354
chr177508848675088581E07342503
chr177509238275092422E07346399
chr177509249575093378E07346512
chr177509373775094210E07347754
chr177509450875095501E07348525
chr177509551575095582E07349532
chr177509563675095737E07349653
chr177509579275095928E07349809
chr177503349875033727E074-12256
chr177508602975086093E07440046
chr177508619775086260E07440214
chr177509249575093378E07446512
chr177509373775094210E07447754
chr177509450875095501E07448525
chr177509551575095582E07449532
chr177509563675095737E07449653
chr177509579275095928E07449809
chr177500228875002364E081-43619
chr177500253375002624E081-43359
chr177501033775010539E081-35444
chr177503228875032425E081-13558
chr177503266175032761E081-13222
chr177503349875033727E081-12256
chr177503382975033879E081-12104
chr177503407375034127E081-11856
chr177503418975034374E081-11609
chr177503996875040114E081-5869
chr177505202075052082E0816037
chr177506713275067195E08121149
chr177506770875067758E08121725
chr177506958675069721E08123603
chr177506978575069838E08123802
chr177507226075073165E08126277
chr177507327475073324E08127291
chr177508602975086093E08140046
chr177508619775086260E08140214
chr177506713275067195E08221149
chr177508602975086093E08240046
chr177508619775086260E08240214
chr177508643175086517E08240448
chr177508662975086888E08240646
chr177508693875087027E08240955
chr177508750675087713E08241523










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr177508409975085825E06738116
chr177508409975085825E06838116
chr177508409975085825E06938116
chr177508409975085825E07038116
chr177508409975085825E07138116
chr177508409975085825E07238116
chr177508409975085825E07338116
chr177508409975085825E07438116
chr177508409975085825E08138116
chr177508409975085825E08238116