rs6793612

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
C==0277 (8311/29956,GnomAD)
C==0249 (7277/29118,TOPMED)
C==0273 (1368/5008,1000G)
C==0309 (1191/3854,ALSPAC)
C==0306 (1136/3708,TWINSUK)
chr3:23642821 (GRCh38.p7) (3p24.3)
AD
GWASdb2
1   publication(s)
See rs on genome
77 Enhancers around
8 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.23642821C>T
GRCh37.p13 chr 3NC_000003.11:g.23684312C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.172T=0.828
1000GenomesAmericanSub694C=0.190T=0.810
1000GenomesEast AsianSub1008C=0.280T=0.720
1000GenomesEuropeSub1006C=0.291T=0.709
1000GenomesGlobalStudy-wide5008C=0.273T=0.727
1000GenomesSouth AsianSub978C=0.450T=0.550
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.309T=0.691
The Genome Aggregation DatabaseAfricanSub8724C=0.197T=0.803
The Genome Aggregation DatabaseAmericanSub836C=0.220T=0.780
The Genome Aggregation DatabaseEast AsianSub1610C=0.288T=0.712
The Genome Aggregation DatabaseEuropeSub18484C=0.319T=0.680
The Genome Aggregation DatabaseGlobalStudy-wide29956C=0.277T=0.722
The Genome Aggregation DatabaseOtherSub302C=0.140T=0.860
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.249T=0.750
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.306T=0.694
PMID Title Author Journal
23953852Genome-wide association studies of maximum number of drinks.Pan YJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs67936127.36E-05alcohol consumption23953852

eQTL of rs6793612 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6793612 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr32364236023642440E067-41872
chr32364257323643310E067-41002
chr32365320023653259E067-31053
chr32367480923674892E067-9420
chr32367493523675014E067-9298
chr32367509923675321E067-8991
chr32367542523675539E067-8773
chr32370482923704951E06720517
chr32370495623705036E06720644
chr32370526123705394E06720949
chr32370540123705564E06721089
chr32372697823727774E06742666
chr32372782723727919E06743515
chr32372802023728362E06743708
chr32364236023642440E068-41872
chr32364257323643310E068-41002
chr32370482923704951E06820517
chr32370495623705036E06820644
chr32370482923704951E06920517
chr32370495623705036E06920644
chr32370526123705394E06920949
chr32370540123705564E06921089
chr32372782723727919E06943515
chr32372802023728362E06943708
chr32364257323643310E070-41002
chr32365327823653821E070-30491
chr32365383223654415E070-29897
chr32372782723727919E07043515
chr32372802023728362E07043708
chr32372854823728598E07044236
chr32367480923674892E071-9420
chr32367493523675014E071-9298
chr32367509923675321E071-8991
chr32370147023701683E07117158
chr32370482923704951E07120517
chr32370495623705036E07120644
chr32370526123705394E07120949
chr32370540123705564E07121089
chr32371119223711308E07126880
chr32371140523711706E07127093
chr32372697823727774E07142666
chr32372782723727919E07143515
chr32372802023728362E07143708
chr32372854823728598E07144236
chr32367480923674892E072-9420
chr32367493523675014E072-9298
chr32367509923675321E072-8991
chr32367542523675539E072-8773
chr32368866423688907E0724352
chr32370482923704951E07220517
chr32370495623705036E07220644
chr32370526123705394E07220949
chr32370540123705564E07221089
chr32372697823727774E07242666
chr32372782723727919E07243515
chr32372802023728362E07243708
chr32365320023653259E073-31053
chr32365327823653821E073-30491
chr32365383223654415E073-29897
chr32365320023653259E074-31053
chr32365327823653821E074-30491
chr32367480923674892E074-9420
chr32367493523675014E074-9298
chr32370147023701683E07417158
chr32370482923704951E07420517
chr32370495623705036E07420644
chr32370526123705394E07420949
chr32371119223711308E07426880
chr32371140523711706E07427093
chr32372697823727774E07442666
chr32372782723727919E07443515
chr32372802023728362E07443708
chr32364236023642440E081-41872
chr32364257323643310E081-41002
chr32372802023728362E08143708
chr32372854823728598E08144236
chr32364257323643310E082-41002










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr32371325723713857E06728945
chr32371325723713857E06828945
chr32371325723713857E06928945
chr32371325723713857E07128945
chr32371325723713857E07228945
chr32371325723713857E07328945
chr32371325723713857E07428945
chr32371325723713857E08228945