rs6795607

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0269 (8051/29842,GnomAD)
C=0358 (10443/29118,TOPMED)
C=0316 (1582/5008,1000G)
C=0115 (443/3854,ALSPAC)
C=0114 (423/3708,TWINSUK)
chr3:24589674 (GRCh38.p7) (3p24.2)
AD
GWASdb2
1   publication(s)
See rs on genome
11 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.24589674T>C
GRCh37.p13 chr 3NC_000003.11:g.24631165T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.296C=0.704
1000GenomesAmericanSub694T=0.820C=0.180
1000GenomesEast AsianSub1008T=0.834C=0.166
1000GenomesEuropeSub1006T=0.887C=0.113
1000GenomesGlobalStudy-wide5008T=0.684C=0.316
1000GenomesSouth AsianSub978T=0.750C=0.250
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.885C=0.115
The Genome Aggregation DatabaseAfricanSub8694T=0.359C=0.641
The Genome Aggregation DatabaseAmericanSub836T=0.790C=0.210
The Genome Aggregation DatabaseEast AsianSub1594T=0.876C=0.124
The Genome Aggregation DatabaseEuropeSub18416T=0.890C=0.109
The Genome Aggregation DatabaseGlobalStudy-wide29842T=0.730C=0.269
The Genome Aggregation DatabaseOtherSub302T=0.730C=0.270
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.641C=0.358
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.886C=0.114
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs67956070.0000236alcoholismpha002893
rs67956070.000024alcohol dependence20201924
rs67956070.00099alcohol dependence(early age of onset)20201924

eQTL of rs6795607 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6795607 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr32462408424624285E070-6880
chr32463093724631093E070-72
chr32463145224632302E070287
chr32464666924646791E07015504
chr32460127524601478E081-29687
chr32460156724601679E081-29486
chr32463145224632302E081287
chr32465052624650861E08119361
chr32465087124651107E08119706
chr32467303724673317E08141872
chr32465052624650861E08219361