rs6799941

Homo sapiens
T>G
None
Check p-value
SNV (Single Nucleotide Variation)
T==0317 (9490/29904,GnomAD)
T==0262 (7651/29118,TOPMED)
T==0260 (1304/5008,1000G)
T==0440 (1694/3854,ALSPAC)
T==0438 (1624/3708,TWINSUK)
chr3:153281590 (GRCh38.p7) (3q25.2)
AD
GWASdb2
1   publication(s)
See rs on genome
9 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.153281590T>G
GRCh37.p13 chr 3NC_000003.11:g.152999379T>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.023G=0.977
1000GenomesAmericanSub694T=0.310G=0.690
1000GenomesEast AsianSub1008T=0.225G=0.775
1000GenomesEuropeSub1006T=0.430G=0.570
1000GenomesGlobalStudy-wide5008T=0.260G=0.740
1000GenomesSouth AsianSub978T=0.410G=0.590
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.440G=0.560
The Genome Aggregation DatabaseAfricanSub8718T=0.084G=0.916
The Genome Aggregation DatabaseAmericanSub838T=0.310G=0.690
The Genome Aggregation DatabaseEast AsianSub1614T=0.234G=0.766
The Genome Aggregation DatabaseEuropeSub18434T=0.435G=0.564
The Genome Aggregation DatabaseGlobalStudy-wide29904T=0.317G=0.682
The Genome Aggregation DatabaseOtherSub300T=0.350G=0.650
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.262G=0.737
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.438G=0.562
PMID Title Author Journal
24277619ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.Quillen EEAm J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs67999410.00076alcohol consumption (maxi-drinks)24277619

eQTL of rs6799941 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6799941 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3153023054153023348E06823675
chr3153023567153023618E06824188
chr3153001877153002613E0692498
chr3153001877153002613E0712498
chr3153003798153003895E0714419
chr3152964624152964982E074-34397
chr3152965072152965673E074-33706
chr3152965740152966052E074-33327
chr3153003798153003895E0744419