rs6803625

Homo sapiens
C>G
None
Check p-value
SNV (Single Nucleotide Variation)
C==0022 (675/29980,GnomAD)
C==0020 (607/29118,TOPMED)
C==0013 (63/5008,1000G)
C==0032 (124/3854,ALSPAC)
C==0035 (131/3708,TWINSUK)
chr3:28147258 (GRCh38.p7) (3p24.1)
AD
GWASdb2
1   publication(s)
See rs on genome
5 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.28147258C>G
GRCh37.p13 chr 3NC_000003.11:g.28188749C>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.002G=0.998
1000GenomesAmericanSub694C=0.020G=0.980
1000GenomesEast AsianSub1008C=0.001G=0.999
1000GenomesEuropeSub1006C=0.033G=0.967
1000GenomesGlobalStudy-wide5008C=0.013G=0.987
1000GenomesSouth AsianSub978C=0.010G=0.990
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.032G=0.968
The Genome Aggregation DatabaseAfricanSub8734C=0.007G=0.993
The Genome Aggregation DatabaseAmericanSub838C=0.020G=0.980
The Genome Aggregation DatabaseEast AsianSub1616C=0.000G=1.000
The Genome Aggregation DatabaseEuropeSub18490C=0.031G=0.968
The Genome Aggregation DatabaseGlobalStudy-wide29980C=0.022G=0.977
The Genome Aggregation DatabaseOtherSub302C=0.060G=0.940
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.020G=0.979
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.035G=0.965
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs68036250.000562alcohol dependence21314694

eQTL of rs6803625 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6803625 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr32819664728196847E0817898
chr32819685728197467E0818108
chr32819749628197570E0818747
chr32819664728196847E0827898
chr32819685728197467E0828108