rs6813400

Homo sapiens
A>C
None
Check p-value
SNV (Single Nucleotide Variation)
A==0375 (11163/29762,GnomAD)
A==0388 (11312/29118,TOPMED)
A==0398 (1993/5008,1000G)
A==0327 (1259/3854,ALSPAC)
A==0332 (1230/3708,TWINSUK)
chr4:123562157 (GRCh38.p7) (4q28.1)
AD
GWASdb2
1   publication(s)
See rs on genome
22 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.123562157A>C
GRCh37.p13 chr 4NC_000004.11:g.124483312A>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.470C=0.530
1000GenomesAmericanSub694A=0.380C=0.620
1000GenomesEast AsianSub1008A=0.356C=0.644
1000GenomesEuropeSub1006A=0.348C=0.652
1000GenomesGlobalStudy-wide5008A=0.398C=0.602
1000GenomesSouth AsianSub978A=0.410C=0.590
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.327C=0.673
The Genome Aggregation DatabaseAfricanSub8678A=0.440C=0.560
The Genome Aggregation DatabaseAmericanSub832A=0.440C=0.560
The Genome Aggregation DatabaseEast AsianSub1598A=0.349C=0.651
The Genome Aggregation DatabaseEuropeSub18356A=0.344C=0.656
The Genome Aggregation DatabaseGlobalStudy-wide29762A=0.375C=0.624
The Genome Aggregation DatabaseOtherSub298A=0.380C=0.620
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.388C=0.611
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.332C=0.668
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs68134000.000143alcohol dependence20201924

eQTL of rs6813400 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6813400 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr4124466572124466681E068-16631
chr4124475731124477442E068-5870
chr4124477492124477560E068-5752
chr4124520639124522165E06837327
chr4124520209124520626E07036897
chr4124520639124522165E07037327
chr4124522194124522987E07038882
chr4124473884124473947E071-9365
chr4124473985124474099E071-9213
chr4124474250124474300E071-9012
chr4124475396124475540E071-7772
chr4124475614124475690E071-7622
chr4124475731124477442E071-5870
chr4124477492124477560E071-5752
chr4124509039124510739E07125727
chr4124520209124520626E07136897
chr4124520639124522165E07137327
chr4124475731124477442E073-5870
chr4124475614124475690E074-7622
chr4124475731124477442E074-5870
chr4124520639124522165E07437327
chr4124522194124522987E07438882