rs6847801

Homo sapiens
C>G / C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0088 (2640/29948,GnomAD)
T=0079 (396/5008,1000G)
T=0077 (298/3854,ALSPAC)
T=0073 (271/3708,TWINSUK)
chr4:38296648 (GRCh38.p7) (4p14)
ND
GWASdb2
1   publication(s)
See rs on genome
3 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.38296648C>G
GRCh38.p7 chr 4NC_000004.12:g.38296648C>T
GRCh37.p13 chr 4NC_000004.11:g.38298269C>G
GRCh37.p13 chr 4NC_000004.11:g.38298269C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.868T=0.132
1000GenomesAmericanSub694C=0.950T=0.050
1000GenomesEast AsianSub1008C=0.997T=0.003
1000GenomesEuropeSub1006C=0.921T=0.079
1000GenomesGlobalStudy-wide5008C=0.921T=0.079
1000GenomesSouth AsianSub978C=0.890T=0.110
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.923T=0.077
The Genome Aggregation DatabaseAfricanSub8706C=0.872T=0.128
The Genome Aggregation DatabaseAmericanSub838C=0.950T=0.050
The Genome Aggregation DatabaseEast AsianSub1616C=0.996T=0.004
The Genome Aggregation DatabaseEuropeSub18486C=0.920T=0.079
The Genome Aggregation DatabaseGlobalStudy-wide29948C=0.911T=0.088
The Genome Aggregation DatabaseOtherSub302C=0.950T=0.050
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.927T=0.073
PMID Title Author Journal
23643383Genome-wide association analysis for multiple continuous secondary phenotypes.Schifano EDAm J Hum Genet

P-Value

SNP ID p-value Traits Study
rs68478019.72E-07nicotine dependence (smoking)23643383

eQTL of rs6847801 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6847801 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr41985915119859304E08110826
chr41985960919859917E08111284
chr41984563219845704E082-2621