rs6865094

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0332 (9940/29880,GnomAD)
T=0344 (10038/29118,TOPMED)
T=0257 (1285/5008,1000G)
T=0337 (1299/3854,ALSPAC)
T=0320 (1186/3708,TWINSUK)
chr5:58487236 (GRCh38.p7) (5q11.2)
AD
GWASdb2
1   publication(s)
See rs on genome
11 Enhancers around
77 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.58487236C>T
GRCh37.p13 chr 5NC_000005.9:g.57783063C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.635T=0.365
1000GenomesAmericanSub694C=0.780T=0.220
1000GenomesEast AsianSub1008C=0.825T=0.175
1000GenomesEuropeSub1006C=0.643T=0.357
1000GenomesGlobalStudy-wide5008C=0.743T=0.257
1000GenomesSouth AsianSub978C=0.880T=0.120
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.663T=0.337
The Genome Aggregation DatabaseAfricanSub8678C=0.642T=0.358
The Genome Aggregation DatabaseAmericanSub838C=0.790T=0.210
The Genome Aggregation DatabaseEast AsianSub1614C=0.816T=0.184
The Genome Aggregation DatabaseEuropeSub18456C=0.661T=0.338
The Genome Aggregation DatabaseGlobalStudy-wide29880C=0.667T=0.332
The Genome Aggregation DatabaseOtherSub294C=0.630T=0.370
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.655T=0.344
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.680T=0.320
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs68650940.000934alcohol dependence20201924

eQTL of rs6865094 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6865094 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr55776280157763073E068-19990
chr55778619557786288E0703132
chr55778636157786567E0703298
chr55778667157786734E0703608
chr55779936757799498E07016304
chr55779956757799732E07016504
chr55781988957819990E07036826
chr55782051657820697E07037453
chr55775794557758819E071-24244
chr55778636157786567E0743298
chr55778667157786734E0743608




Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr55775093057751281E067-31782
chr55775136957751454E067-31609
chr55775145757751571E067-31492
chr55775184357752176E067-30887
chr55775225557752535E067-30528
chr55775300857753544E067-29519
chr55775370757753757E067-29306
chr55775396657754024E067-29039
chr55775404257754220E067-28843
chr55775427257754480E067-28583
chr55775448957757094E067-25969
chr55775001757750122E068-32941
chr55775184357752176E068-30887
chr55775225557752535E068-30528
chr55775370757753757E068-29306
chr55775396657754024E068-29039
chr55775404257754220E068-28843
chr55775427257754480E068-28583
chr55775448957757094E068-25969
chr55775093057751281E069-31782
chr55775184357752176E069-30887
chr55775225557752535E069-30528
chr55775300857753544E069-29519
chr55775370757753757E069-29306
chr55775396657754024E069-29039
chr55775404257754220E069-28843
chr55775427257754480E069-28583
chr55775448957757094E069-25969
chr55775300857753544E070-29519
chr55775370757753757E070-29306
chr55775396657754024E070-29039
chr55775404257754220E070-28843
chr55775427257754480E070-28583
chr55775448957757094E070-25969
chr55775136957751454E071-31609
chr55775184357752176E071-30887
chr55775225557752535E071-30528
chr55775300857753544E071-29519
chr55775370757753757E071-29306
chr55775396657754024E071-29039
chr55775404257754220E071-28843
chr55775427257754480E071-28583
chr55775448957757094E071-25969
chr55775001757750122E072-32941
chr55775093057751281E072-31782
chr55775136957751454E072-31609
chr55775145757751571E072-31492
chr55775184357752176E072-30887
chr55775225557752535E072-30528
chr55775300857753544E072-29519
chr55775370757753757E072-29306
chr55775396657754024E072-29039
chr55775404257754220E072-28843
chr55775427257754480E072-28583
chr55775448957757094E072-25969
chr55775001757750122E073-32941
chr55775093057751281E073-31782
chr55775136957751454E073-31609
chr55775145757751571E073-31492
chr55775184357752176E073-30887
chr55775225557752535E073-30528
chr55775370757753757E073-29306
chr55775396657754024E073-29039
chr55775404257754220E073-28843
chr55775427257754480E073-28583
chr55775448957757094E073-25969
chr55775448957757094E074-25969
chr55775093057751281E081-31782
chr55775396657754024E081-29039
chr55775404257754220E081-28843
chr55775427257754480E081-28583
chr55775448957757094E081-25969
chr55775370757753757E082-29306
chr55775396657754024E082-29039
chr55775404257754220E082-28843
chr55775427257754480E082-28583
chr55775448957757094E082-25969