rs6870671

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0058 (1751/29986,GnomAD)
C=0094 (2750/29118,TOPMED)
C=0063 (318/5008,1000G)
C=0001 (2/3854,ALSPAC)
C=0001 (2/3708,TWINSUK)
chr5:98303039 (GRCh38.p7) (5q15)
AD
GWASdb2
1   publication(s)
See rs on genome
16 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.98303039T>C
GRCh37.p13 chr 5NC_000005.9:g.97638743T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.766C=0.234
1000GenomesAmericanSub694T=0.990C=0.010
1000GenomesEast AsianSub1008T=0.998C=0.002
1000GenomesEuropeSub1006T=0.998C=0.002
1000GenomesGlobalStudy-wide5008T=0.937C=0.063
1000GenomesSouth AsianSub978T=1.000C=0.000
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.999C=0.001
The Genome Aggregation DatabaseAfricanSub8730T=0.802C=0.198
The Genome Aggregation DatabaseAmericanSub838T=0.990C=0.010
The Genome Aggregation DatabaseEast AsianSub1612T=1.000C=0.000
The Genome Aggregation DatabaseEuropeSub18504T=0.999C=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29986T=0.941C=0.058
The Genome Aggregation DatabaseOtherSub302T=1.000C=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.905C=0.094
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.999C=0.001
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs68706710.000908alcohol dependence20201924

eQTL of rs6870671 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6870671 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr59763728697637608E067-1135
chr59764480997644936E0686066
chr59765603597656120E06817292
chr59765615697656337E06817413
chr59765603597656120E06917292
chr59765615697656337E06917413
chr59763728697637608E071-1135
chr59765102297651072E07112279
chr59765112997651210E07112386
chr59764997797650529E07211234
chr59765102297651072E07212279
chr59765112997651210E07212386
chr59763728697637608E074-1135
chr59764480997644936E0746066
chr59765603597656120E07417292
chr59765615697656337E07417413