SNP Detail Info-rs6870671

Organism: Homo sapiens

Alleles: T>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C=0058 (1751/29986,GnomAD)
C=0094 (2750/29118,TOPMED)
C=0063 (318/5008,1000G)
C=0001 (2/3854,ALSPAC)
C=0001 (2/3708,TWINSUK)

Position: chr5:98303039 (GRCh38.p7) (5q15)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 16 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.98303039T>C
GRCh37.p13 chr 5	NC_000005.9:g.97638743T>C

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.766	C=0.234
1000Genomes	American	Sub	694	T=0.990	C=0.010
1000Genomes	East Asian	Sub	1008	T=0.998	C=0.002
1000Genomes	Europe	Sub	1006	T=0.998	C=0.002
1000Genomes	Global	Study-wide	5008	T=0.937	C=0.063
1000Genomes	South Asian	Sub	978	T=1.000	C=0.000
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.999	C=0.001
The Genome Aggregation Database	African	Sub	8730	T=0.802	C=0.198
The Genome Aggregation Database	American	Sub	838	T=0.990	C=0.010
The Genome Aggregation Database	East Asian	Sub	1612	T=1.000	C=0.000
The Genome Aggregation Database	Europe	Sub	18504	T=0.999	C=0.000
The Genome Aggregation Database	Global	Study-wide	29986	T=0.941	C=0.058
The Genome Aggregation Database	Other	Sub	302	T=1.000	C=0.000
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.905	C=0.094
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.999	C=0.001

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs6870671	0.000908	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr5	97637286	97637608	E067	-1135
chr5	97644809	97644936	E068	6066
chr5	97656035	97656120	E068	17292
chr5	97656156	97656337	E068	17413
chr5	97656035	97656120	E069	17292
chr5	97656156	97656337	E069	17413
chr5	97637286	97637608	E071	-1135
chr5	97651022	97651072	E071	12279
chr5	97651129	97651210	E071	12386
chr5	97649977	97650529	E072	11234
chr5	97651022	97651072	E072	12279
chr5	97651129	97651210	E072	12386
chr5	97637286	97637608	E074	-1135
chr5	97644809	97644936	E074	6066
chr5	97656035	97656120	E074	17292
chr5	97656156	97656337	E074	17413

rs6870671