Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 5 | NC_000005.10:g.82619482A>G |
GRCh37.p13 chr 5 | NC_000005.9:g.81915301A>G |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.042 | G=0.958 |
1000Genomes | American | Sub | 694 | A=0.160 | G=0.840 |
1000Genomes | East Asian | Sub | 1008 | A=0.220 | G=0.780 |
1000Genomes | Europe | Sub | 1006 | A=0.189 | G=0.811 |
1000Genomes | Global | Study-wide | 5008 | A=0.175 | G=0.825 |
1000Genomes | South Asian | Sub | 978 | A=0.310 | G=0.690 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.212 | G=0.788 |
The Genome Aggregation Database | African | Sub | 8724 | A=0.068 | G=0.932 |
The Genome Aggregation Database | American | Sub | 836 | A=0.170 | G=0.830 |
The Genome Aggregation Database | East Asian | Sub | 1616 | A=0.224 | G=0.776 |
The Genome Aggregation Database | Europe | Sub | 18468 | A=0.211 | G=0.788 |
The Genome Aggregation Database | Global | Study-wide | 29946 | A=0.168 | G=0.831 |
The Genome Aggregation Database | Other | Sub | 302 | A=0.150 | G=0.850 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.149 | G=0.850 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.218 | G=0.782 |
PMID | Title | Author | Journal |
---|---|---|---|
23183491 | Genome-wide association study identifies a potent locus associated with human opioid sensitivity. | Nishizawa D | Mol Psychiatry |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs6877560 | 0.000118 | Opioid sensitivity | 23183491 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr5 | 81936730 | 81937701 | E067 | 21429 |
chr5 | 81937817 | 81937948 | E067 | 22516 |
chr5 | 81937962 | 81938087 | E067 | 22661 |
chr5 | 81935864 | 81935996 | E068 | 20563 |
chr5 | 81936730 | 81937701 | E068 | 21429 |
chr5 | 81934830 | 81934899 | E069 | 19529 |
chr5 | 81934953 | 81935025 | E069 | 19652 |
chr5 | 81935070 | 81935242 | E069 | 19769 |
chr5 | 81935279 | 81935510 | E069 | 19978 |
chr5 | 81935547 | 81935845 | E069 | 20246 |
chr5 | 81935864 | 81935996 | E069 | 20563 |
chr5 | 81936000 | 81936067 | E069 | 20699 |
chr5 | 81936730 | 81937701 | E069 | 21429 |
chr5 | 81934598 | 81934770 | E070 | 19297 |
chr5 | 81934830 | 81934899 | E070 | 19529 |
chr5 | 81934953 | 81935025 | E070 | 19652 |
chr5 | 81935070 | 81935242 | E070 | 19769 |
chr5 | 81935279 | 81935510 | E070 | 19978 |
chr5 | 81935547 | 81935845 | E070 | 20246 |
chr5 | 81935864 | 81935996 | E070 | 20563 |
chr5 | 81936000 | 81936067 | E070 | 20699 |
chr5 | 81936730 | 81937701 | E070 | 21429 |
chr5 | 81940571 | 81940773 | E070 | 25270 |
chr5 | 81934953 | 81935025 | E071 | 19652 |
chr5 | 81935070 | 81935242 | E071 | 19769 |
chr5 | 81935279 | 81935510 | E071 | 19978 |
chr5 | 81936730 | 81937701 | E071 | 21429 |
chr5 | 81936730 | 81937701 | E072 | 21429 |
chr5 | 81934598 | 81934770 | E073 | 19297 |
chr5 | 81934830 | 81934899 | E073 | 19529 |
chr5 | 81934953 | 81935025 | E073 | 19652 |
chr5 | 81935070 | 81935242 | E073 | 19769 |
chr5 | 81935279 | 81935510 | E073 | 19978 |
chr5 | 81935547 | 81935845 | E073 | 20246 |
chr5 | 81881565 | 81881649 | E081 | -33652 |
chr5 | 81881688 | 81881751 | E081 | -33550 |
chr5 | 81891895 | 81891945 | E081 | -23356 |
chr5 | 81892314 | 81892954 | E081 | -22347 |
chr5 | 81893342 | 81893547 | E081 | -21754 |
chr5 | 81934598 | 81934770 | E081 | 19297 |
chr5 | 81934830 | 81934899 | E081 | 19529 |
chr5 | 81934953 | 81935025 | E081 | 19652 |
chr5 | 81935070 | 81935242 | E081 | 19769 |
chr5 | 81935279 | 81935510 | E081 | 19978 |
chr5 | 81935547 | 81935845 | E081 | 20246 |
chr5 | 81935864 | 81935996 | E081 | 20563 |
chr5 | 81936000 | 81936067 | E081 | 20699 |
chr5 | 81936730 | 81937701 | E081 | 21429 |
chr5 | 81937817 | 81937948 | E081 | 22516 |
chr5 | 81937962 | 81938087 | E081 | 22661 |
chr5 | 81938282 | 81938427 | E081 | 22981 |
chr5 | 81952071 | 81952851 | E081 | 36770 |
chr5 | 81952919 | 81952997 | E081 | 37618 |
chr5 | 81953002 | 81953080 | E081 | 37701 |
chr5 | 81953242 | 81953351 | E081 | 37941 |
chr5 | 81882015 | 81883089 | E082 | -32212 |
chr5 | 81934830 | 81934899 | E082 | 19529 |
chr5 | 81934953 | 81935025 | E082 | 19652 |
chr5 | 81935070 | 81935242 | E082 | 19769 |
chr5 | 81935279 | 81935510 | E082 | 19978 |
chr5 | 81935547 | 81935845 | E082 | 20246 |
chr5 | 81935864 | 81935996 | E082 | 20563 |
chr5 | 81936000 | 81936067 | E082 | 20699 |
chr5 | 81940571 | 81940773 | E082 | 25270 |