SNP Detail Info-rs6883317

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0168 (5058/29948,GnomAD)
A=0174 (5069/29118,TOPMED)
A=0174 (872/5008,1000G)
A=0175 (673/3854,ALSPAC)
A=0161 (598/3708,TWINSUK)

Position: chr5:156971242 (GRCh38.p7) (5q33.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 2 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.156971242G>A
GRCh37.p13 chr 5	NC_000005.9:g.156398253G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.769	A=0.231
1000Genomes	American	Sub	694	G=0.850	A=0.150
1000Genomes	East Asian	Sub	1008	G=0.842	A=0.158
1000Genomes	Europe	Sub	1006	G=0.847	A=0.153
1000Genomes	Global	Study-wide	5008	G=0.826	A=0.174
1000Genomes	South Asian	Sub	978	G=0.840	A=0.160
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.825	A=0.175
The Genome Aggregation Database	African	Sub	8718	G=0.811	A=0.189
The Genome Aggregation Database	American	Sub	836	G=0.900	A=0.100
The Genome Aggregation Database	East Asian	Sub	1616	G=0.862	A=0.138
The Genome Aggregation Database	Europe	Sub	18476	G=0.835	A=0.164
The Genome Aggregation Database	Global	Study-wide	29948	G=0.831	A=0.168
The Genome Aggregation Database	Other	Sub	302	G=0.790	A=0.210
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.825	A=0.174
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.839	A=0.161

PMID	Title	Author	Journal
21818250	Genomic regions identified by overlapping clusters of nominally-positive SNPs from genome-wide studies of alcohol and illegal substance dependence.	Johnson C	PLoS One
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs6883317	1.19E-05	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs6883317