| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 5 | NC_000005.10:g.83865459G>A |
| GRCh37.p13 chr 5 | NC_000005.9:g.83161278G>A |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.058 | A=0.942 |
| 1000Genomes | American | Sub | 694 | G=0.200 | A=0.800 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.170 | A=0.830 |
| 1000Genomes | Europe | Sub | 1006 | G=0.287 | A=0.713 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.171 | A=0.829 |
| 1000Genomes | South Asian | Sub | 978 | G=0.190 | A=0.810 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.224 | A=0.776 |
| The Genome Aggregation Database | African | Sub | 8726 | G=0.089 | A=0.911 |
| The Genome Aggregation Database | American | Sub | 836 | G=0.230 | A=0.770 |
| The Genome Aggregation Database | East Asian | Sub | 1618 | G=0.197 | A=0.803 |
| The Genome Aggregation Database | Europe | Sub | 18442 | G=0.245 | A=0.754 |
| The Genome Aggregation Database | Global | Study-wide | 29924 | G=0.197 | A=0.802 |
| The Genome Aggregation Database | Other | Sub | 302 | G=0.260 | A=0.740 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.181 | A=0.818 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.243 | A=0.757 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs6885336 | 0.000696 | alcohol dependence | 21314694 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr5 | 83151440 | 83151509 | E070 | -9769 |
| chr5 | 83151987 | 83152037 | E070 | -9241 |
| chr5 | 83152442 | 83152507 | E070 | -8771 |
| chr5 | 83152587 | 83152677 | E070 | -8601 |
| chr5 | 83152744 | 83153026 | E070 | -8252 |
| chr5 | 83153327 | 83153470 | E070 | -7808 |
| chr5 | 83196267 | 83196400 | E071 | 34989 |
| chr5 | 83152442 | 83152507 | E081 | -8771 |
| chr5 | 83152587 | 83152677 | E081 | -8601 |
| chr5 | 83152744 | 83153026 | E081 | -8252 |