SNP Detail Info-rs6889665

Organism: Homo sapiens

Alleles: T>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C=0092 (2773/29920,GnomAD)
C=0133 (3873/29118,TOPMED)
C=0107 (536/5008,1000G)
C=0028 (107/3854,ALSPAC)
C=0029 (108/3708,TWINSUK)

Position: chr5:23532534 (GRCh38.p7) (5p14.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 1 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.23532534T>C
GRCh37.p13 chr 5	NC_000005.9:g.23532643T>C

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.733	C=0.267
1000Genomes	American	Sub	694	T=0.910	C=0.090
1000Genomes	East Asian	Sub	1008	T=0.959	C=0.041
1000Genomes	Europe	Sub	1006	T=0.969	C=0.031
1000Genomes	Global	Study-wide	5008	T=0.893	C=0.107
1000Genomes	South Asian	Sub	978	T=0.950	C=0.050
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.972	C=0.028
The Genome Aggregation Database	African	Sub	8712	T=0.753	C=0.247
The Genome Aggregation Database	American	Sub	838	T=0.920	C=0.080
The Genome Aggregation Database	East Asian	Sub	1618	T=0.953	C=0.047
The Genome Aggregation Database	Europe	Sub	18450	T=0.974	C=0.025
The Genome Aggregation Database	Global	Study-wide	29920	T=0.907	C=0.092
The Genome Aggregation Database	Other	Sub	302	T=0.940	C=0.060
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.867	C=0.133
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.971	C=0.029

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs6889665	0.000553	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs6889665