rs6901155

Homo sapiens
C>A
KIF6 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0319 (9567/29930,GnomAD)
A=0368 (10720/29118,TOPMED)
A=0374 (1871/5008,1000G)
A=0189 (727/3854,ALSPAC)
A=0194 (719/3708,TWINSUK)
chr6:39532803 (GRCh38.p7) (6p21.2)
ND
GWASdb2
1   publication(s)
See rs on genome
22 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.39532803C>A
GRCh37.p13 chr 6NC_000006.11:g.39500579C>A

Gene: KIF6, kinesin family member 6(minus strand)

Molecule type Change Amino acid[Codon] SO Term
KIF6 transcript variant 2NM_001289020.1:c.N/AIntron Variant
KIF6 transcript variant 3NM_001289021.1:c.N/AIntron Variant
KIF6 transcript variant 1NM_145027.4:c.N/AIntron Variant
KIF6 transcript variant 4NM_001289024.1:c.N/AGenic Upstream Transcript Variant
KIF6 transcript variant X1XM_005248904.4:c.N/AIntron Variant
KIF6 transcript variant X2XM_011514357.2:c.N/AIntron Variant
KIF6 transcript variant X3XM_011514358.2:c.N/AIntron Variant
KIF6 transcript variant X4XM_011514359.2:c.N/AIntron Variant
KIF6 transcript variant X5XM_017010427.1:c.N/AIntron Variant
KIF6 transcript variant X6XM_017010428.1:c.N/AIntron Variant
KIF6 transcript variant X8XM_011514361.2:c.N/AGenic Downstream Transcript Variant
KIF6 transcript variant X7XR_001743238.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.372A=0.628
1000GenomesAmericanSub694C=0.740A=0.260
1000GenomesEast AsianSub1008C=0.730A=0.270
1000GenomesEuropeSub1006C=0.808A=0.192
1000GenomesGlobalStudy-wide5008C=0.626A=0.374
1000GenomesSouth AsianSub978C=0.590A=0.410
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.811A=0.189
The Genome Aggregation DatabaseAfricanSub8708C=0.419A=0.581
The Genome Aggregation DatabaseAmericanSub838C=0.690A=0.310
The Genome Aggregation DatabaseEast AsianSub1618C=0.703A=0.297
The Genome Aggregation DatabaseEuropeSub18464C=0.800A=0.200
The Genome Aggregation DatabaseGlobalStudy-wide29930C=0.680A=0.319
The Genome Aggregation DatabaseOtherSub302C=0.750A=0.250
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.631A=0.368
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.806A=0.194
PMID Title Author Journal
19268276Genome-wide association study of smoking initiation and current smoking.Vink JMAm J Hum Genet

P-Value

SNP ID p-value Traits Study
rs69011552.76E-05nicotine smoking19268276

eQTL of rs6901155 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6901155 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr63945618439456275E067-44304
chr63948874639488935E067-11644
chr63948894039489158E067-11421
chr63948920339489322E067-11257
chr63948937639489605E067-10974
chr63949386339493979E067-6600
chr63949489139494951E067-5628
chr63949499939495049E067-5530
chr63949386339493979E068-6600
chr63945618439456275E069-44304
chr63949791239498439E069-2140
chr63954516739545811E06944588
chr63954516739545811E07044588
chr63945618439456275E071-44304
chr63948920339489322E071-11257
chr63949386339493979E072-6600
chr63949489139494951E072-5628
chr63949499939495049E072-5530
chr63948859839488717E074-11862
chr63948859839488717E081-11862
chr63948874639488935E081-11644
chr63948894039489158E081-11421