rs6901928

Homo sapiens
T>C
ZFAND3 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C=0027 (820/29990,GnomAD)
C=0041 (1212/29118,TOPMED)
C=0026 (130/5008,1000G)
C=0000 (0/3854,ALSPAC)
C=0000 (1/3708,TWINSUK)
chr6:37969526 (GRCh38.p7) (6p21.2)
AD
GWASdb2
1   publication(s)
See rs on genome
206 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.37969526T>C
GRCh37.p13 chr 6NC_000006.11:g.37937302T>C

Gene: ZFAND3, zinc finger AN1-type containing 3(plus strand)

Molecule type Change Amino acid[Codon] SO Term
ZFAND3 transcriptNM_021943.2:c.N/AIntron Variant
ZFAND3 transcript variant X2XM_005249269.1:c.N/AIntron Variant
ZFAND3 transcript variant X3XM_011514790.1:c.N/AIntron Variant
ZFAND3 transcript variant X1XM_017011171.1:c.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.908C=0.092
1000GenomesAmericanSub694T=0.990C=0.010
1000GenomesEast AsianSub1008T=1.000C=0.000
1000GenomesEuropeSub1006T=0.996C=0.004
1000GenomesGlobalStudy-wide5008T=0.974C=0.026
1000GenomesSouth AsianSub978T=1.000C=0.000
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=1.000C=0.000
The Genome Aggregation DatabaseAfricanSub8730T=0.908C=0.092
The Genome Aggregation DatabaseAmericanSub838T=0.990C=0.010
The Genome Aggregation DatabaseEast AsianSub1620T=1.000C=0.000
The Genome Aggregation DatabaseEuropeSub18500T=0.999C=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29990T=0.972C=0.027
The Genome Aggregation DatabaseOtherSub302T=1.000C=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.958C=0.041
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=1.000C=0.000
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs69019280.0000973alcoholismpha002891
rs69019280.0000973alcohol dependence20201924

eQTL of rs6901928 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6901928 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr63789458437894728E067-42574
chr63789615937896236E067-41066
chr63790916037909672E067-27630
chr63790975337909956E067-27346
chr63791047137910657E067-26645
chr63791084737910977E067-26325
chr63791136937911468E067-25834
chr63794785337947911E06710551
chr63794809037948245E06710788
chr63794825437948407E06710952
chr63794888037948947E06711578
chr63794901937949166E06711717
chr63795589337956203E06718591
chr63795638737956475E06719085
chr63795648137956663E06719179
chr63796202937962489E06724727
chr63797636937976426E06739067
chr63798299637983337E06745694
chr63798512937985169E06747827
chr63788769237887773E068-49529
chr63788855937888717E068-48585
chr63789705737897107E068-40195
chr63789723537897344E068-39958
chr63790837437908502E068-28800
chr63790916037909672E068-27630
chr63791047137910657E068-26645
chr63791084737910977E068-26325
chr63791400237914157E068-23145
chr63793347437933530E068-3772
chr63793377037934148E068-3154
chr63794737637947625E06810074
chr63794785337947911E06810551
chr63794809037948245E06810788
chr63794825437948407E06810952
chr63794888037948947E06811578
chr63794901937949166E06811717
chr63795409237954155E06816790
chr63795495537955094E06817653
chr63795589337956203E06818591
chr63795638737956475E06819085
chr63795648137956663E06819179
chr63795814937958189E06820847
chr63795851837959063E06821216
chr63796185537961959E06824553
chr63796202937962489E06824727
chr63797636937976426E06839067
chr63798299637983337E06845694
chr63798471837984822E06847416
chr63798512937985169E06847827
chr63788855937888717E069-48585
chr63789458437894728E069-42574
chr63790659437907099E069-30203
chr63790916037909672E069-27630
chr63790975337909956E069-27346
chr63791047137910657E069-26645
chr63791084737910977E069-26325
chr63791390637913976E069-23326
chr63791400237914157E069-23145
chr63791459537914645E069-22657
chr63794737637947625E06910074
chr63794785337947911E06910551
chr63794809037948245E06910788
chr63794825437948407E06910952
chr63794888037948947E06911578
chr63794901937949166E06911717
chr63794980837949944E06912506
chr63795018237950407E06912880
chr63795589337956203E06918591
chr63795638737956475E06919085
chr63795648137956663E06919179
chr63796202937962489E06924727
chr63796910737969163E06931805
chr63796922037969558E06931918
chr63797636937976426E06939067
chr63798299637983337E06945694
chr63798471837984822E06947416
chr63798512937985169E06947827
chr63789705737897107E070-40195
chr63791400237914157E070-23145
chr63791459537914645E070-22657
chr63794737637947625E07010074
chr63794785337947911E07010551
chr63794809037948245E07010788
chr63794825437948407E07010952
chr63796185537961959E07024553
chr63796202937962489E07024727
chr63798299637983337E07045694
chr63798471837984822E07047416
chr63788855937888717E071-48585
chr63789793837898004E071-39298
chr63789807637898143E071-39159
chr63789815037898201E071-39101
chr63789828537898774E071-38528
chr63789887537898925E071-38377
chr63789903137899150E071-38152
chr63790916037909672E071-27630
chr63790975337909956E071-27346
chr63791084737910977E071-26325
chr63791136937911468E071-25834
chr63792457637924806E071-12496
chr63792484237924909E071-12393
chr63793911437939578E0711812
chr63794737637947625E07110074
chr63794785337947911E07110551
chr63794809037948245E07110788
chr63794825437948407E07110952
chr63794888037948947E07111578
chr63794901937949166E07111717
chr63794980837949944E07112506
chr63795589337956203E07118591
chr63795638737956475E07119085
chr63795648137956663E07119179
chr63795851837959063E07121216
chr63796185537961959E07124553
chr63796202937962489E07124727
chr63796910737969163E07131805
chr63796922037969558E07131918
chr63797636937976426E07139067
chr63797718637977402E07139884
chr63798299637983337E07145694
chr63788855937888717E072-48585
chr63789458437894728E072-42574
chr63789887537898925E072-38377
chr63789903137899150E072-38152
chr63790916037909672E072-27630
chr63790975337909956E072-27346
chr63791084737910977E072-26325
chr63791400237914157E072-23145
chr63793347437933530E072-3772
chr63794737637947625E07210074
chr63794785337947911E07210551
chr63794809037948245E07210788
chr63794825437948407E07210952
chr63794888037948947E07211578
chr63794901937949166E07211717
chr63794980837949944E07212506
chr63795018237950407E07212880
chr63795409237954155E07216790
chr63796185537961959E07224553
chr63796202937962489E07224727
chr63788769237887773E073-49529
chr63788855937888717E073-48585
chr63789807637898143E073-39159
chr63789815037898201E073-39101
chr63789828537898774E073-38528
chr63790916037909672E073-27630
chr63790975337909956E073-27346
chr63791400237914157E073-23145
chr63791459537914645E073-22657
chr63794737637947625E07310074
chr63794785337947911E07310551
chr63794809037948245E07310788
chr63794825437948407E07310952
chr63795589337956203E07318591
chr63795638737956475E07319085
chr63795648137956663E07319179
chr63796185537961959E07324553
chr63796202937962489E07324727
chr63796531237965374E07328010
chr63788769237887773E074-49529
chr63788855937888717E074-48585
chr63789887537898925E074-38377
chr63790837437908502E074-28800
chr63790916037909672E074-27630
chr63790975337909956E074-27346
chr63791136937911468E074-25834
chr63791400237914157E074-23145
chr63791459537914645E074-22657
chr63792457637924806E074-12496
chr63792484237924909E074-12393
chr63794737637947625E07410074
chr63794785337947911E07410551
chr63794809037948245E07410788
chr63794825437948407E07410952
chr63794888037948947E07411578
chr63794901937949166E07411717
chr63794980837949944E07412506
chr63795018237950407E07412880
chr63795589337956203E07418591
chr63795638737956475E07419085
chr63795648137956663E07419179
chr63795814937958189E07420847
chr63795851837959063E07421216
chr63796202937962489E07424727
chr63796910737969163E07431805
chr63796922037969558E07431918
chr63797636937976426E07439067
chr63798299637983337E07445694
chr63789705737897107E081-40195
chr63790837437908502E081-28800
chr63790916037909672E081-27630
chr63790975337909956E081-27346
chr63791047137910657E081-26645
chr63791459537914645E081-22657
chr63794809037948245E08110788
chr63796202937962489E08124727
chr63797636937976426E08139067
chr63797718637977402E08139884
chr63790916037909672E082-27630
chr63790975337909956E082-27346
chr63794737637947625E08210074
chr63794785337947911E08210551
chr63794809037948245E08210788
chr63794825437948407E08210952
chr63796185537961959E08224553
chr63796202937962489E08224727