rs6904528

Homo sapiens
A>T
LOC101928277 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0024 (735/29986,GnomAD)
T=0037 (1100/29118,TOPMED)
T=0025 (124/5008,1000G)
chr6:134827811 (GRCh38.p7) (6q23.3)
AD
GWASdb2
1   publication(s)
See rs on genome
35 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.134827811A>T
GRCh37.p13 chr 6NC_000006.11:g.135148949A>T

Gene: LOC101928277, uncharacterized LOC101928277(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC101928277 transcript variant X1XR_001744363.1:n.N/AIntron Variant
LOC101928277 transcript variant X2XR_001744364.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.911T=0.089
1000GenomesAmericanSub694A=0.990T=0.010
1000GenomesEast AsianSub1008A=1.000T=0.000
1000GenomesEuropeSub1006A=1.000T=0.000
1000GenomesGlobalStudy-wide5008A=0.975T=0.025
1000GenomesSouth AsianSub978A=1.000T=0.000
The Genome Aggregation DatabaseAfricanSub8720A=0.917T=0.083
The Genome Aggregation DatabaseAmericanSub838A=0.990T=0.010
The Genome Aggregation DatabaseEast AsianSub1622A=1.000T=0.000
The Genome Aggregation DatabaseEuropeSub18504A=0.999T=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29986A=0.975T=0.024
The Genome Aggregation DatabaseOtherSub302A=1.000T=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.962T=0.037
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs69045282.34E-05alcohol dependence21314694

eQTL of rs6904528 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6904528 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr6135116954135117109E067-31840
chr6135127748135127818E067-21131
chr6135152042135152344E0673093
chr6135152497135152590E0673548
chr6135143949135144580E068-4369
chr6135116954135117109E069-31840
chr6135142643135142885E069-6064
chr6135143122135143471E069-5478
chr6135143519135143618E069-5331
chr6135143736135143892E069-5057
chr6135143949135144580E069-4369
chr6135144699135144861E069-4088
chr6135152042135152344E0693093
chr6135143122135143471E070-5478
chr6135151784135151874E0702835
chr6135152042135152344E0703093
chr6135152497135152590E0703548
chr6135172033135172210E07023084
chr6135172231135172340E07023282
chr6135116954135117109E071-31840
chr6135127748135127818E071-21131
chr6135143122135143471E071-5478
chr6135143519135143618E071-5331
chr6135143736135143892E071-5057
chr6135143949135144580E071-4369
chr6135152042135152344E0713093
chr6135127748135127818E072-21131
chr6135143122135143471E072-5478
chr6135143519135143618E072-5331
chr6135143736135143892E072-5057
chr6135143949135144580E072-4369
chr6135127748135127818E074-21131
chr6135152042135152344E0743093
chr6135151386135151506E0812437
chr6135151784135151874E0812835