SNP Detail Info-rs6923608

Organism: Homo sapiens

Alleles: G>A / G>C

Gene : Feature

PRDM1 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0186 (5584/29948,GnomAD)
A=0195 (976/5008,1000G)
A=0149 (574/3854,ALSPAC)
A=0152 (565/3708,TWINSUK)

Position: chr6:106089915 (GRCh38.p7) (6q21)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Molecule type	Change	Amino acid[Codon]	SO Term
PRDM1 transcript variant 1	NM_001198.3:c.	N/A	Intron Variant
PRDM1 transcript variant 2	NM_182907.2:c.	N/A	Genic Upstream Transcript Variant
PRDM1 transcript variant X2	XM_006715550.3:c.	N/A	Intron Variant
PRDM1 transcript variant X1	XM_011536062.2:c.	N/A	Intron Variant
PRDM1 transcript variant X3	XM_011536063.2:c.	N/A	Intron Variant
PRDM1 transcript variant X5	XM_017011187.1:c.	N/A	Intron Variant
PRDM1 transcript variant X4	XM_011536064.2:c.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.604	A=0.396
1000Genomes	American	Sub	694	G=0.900	A=0.100
1000Genomes	East Asian	Sub	1008	G=0.802	A=0.198
1000Genomes	Europe	Sub	1006	G=0.889	A=0.111
1000Genomes	Global	Study-wide	5008	G=0.805	A=0.195
1000Genomes	South Asian	Sub	978	G=0.930	A=0.070
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.851	A=0.149
The Genome Aggregation Database	African	Sub	8706	G=0.646	A=0.354
The Genome Aggregation Database	American	Sub	838	G=0.920	A=0.080
The Genome Aggregation Database	East Asian	Sub	1618	G=0.769	A=0.231
The Genome Aggregation Database	Europe	Sub	18484	G=0.890	A=0.109
The Genome Aggregation Database	Global	Study-wide	29948	G=0.813	A=0.186
The Genome Aggregation Database	Other	Sub	302	G=0.890	A=0.110
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.848	A=0.152

PMID	Title	Author	Journal
20158304	A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.	Lind PA	Twin Res Hum Genet

SNP ID	p-value	Traits	Study
rs6923608	3.2E-05	alcohol and nictotine co-dependence	20158304

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs6923608