rs6923772

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
A==0102 (3072/29964,GnomAD)
A==0138 (4043/29118,TOPMED)
A==0100 (500/5008,1000G)
A==0071 (275/3854,ALSPAC)
A==0078 (291/3708,TWINSUK)
chr6:44565574 (GRCh38.p7) (6p21.1)
AD
GWASdb2
1   publication(s)
See rs on genome
35 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.44565574A>G
GRCh37.p13 chr 6NC_000006.11:g.44533311A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.181G=0.819
1000GenomesAmericanSub694A=0.070G=0.930
1000GenomesEast AsianSub1008A=0.023G=0.977
1000GenomesEuropeSub1006A=0.096G=0.904
1000GenomesGlobalStudy-wide5008A=0.100G=0.900
1000GenomesSouth AsianSub978A=0.090G=0.910
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.071G=0.929
The Genome Aggregation DatabaseAfricanSub8726A=0.182G=0.818
The Genome Aggregation DatabaseAmericanSub838A=0.050G=0.950
The Genome Aggregation DatabaseEast AsianSub1622A=0.018G=0.982
The Genome Aggregation DatabaseEuropeSub18476A=0.075G=0.924
The Genome Aggregation DatabaseGlobalStudy-wide29964A=0.102G=0.897
The Genome Aggregation DatabaseOtherSub302A=0.050G=0.950
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.138G=0.861
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.078G=0.922
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs69237720.000817alcohol dependence20201924

eQTL of rs6923772 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6923772 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr64449842244498569E068-34742
chr64449916344499438E068-33873
chr64450991244510133E068-23178
chr64451014544511098E068-22213
chr64453764344538138E0684332
chr64449842244498569E069-34742
chr64449916344499438E069-33873
chr64452864344528741E069-4570
chr64453764344538138E0694332
chr64449916344499438E070-33873
chr64450991244510133E070-23178
chr64451014544511098E070-22213
chr64449842244498569E071-34742
chr64449916344499438E071-33873
chr64453764344538138E0714332
chr64449842244498569E072-34742
chr64453764344538138E0724332
chr64454412944544204E07210818
chr64454423344544317E07210922
chr64449916344499438E073-33873
chr64449842244498569E074-34742
chr64449916344499438E074-33873
chr64452621244526584E074-6727
chr64452663244526782E074-6529
chr64452690944527004E074-6307
chr64452735844527473E074-5838
chr64452761144527651E074-5660
chr64452774044527929E074-5382
chr64453764344538138E0744332
chr64453846744538511E0745156
chr64452621244526584E081-6727
chr64452663244526782E081-6529
chr64452690944527004E081-6307
chr64452735844527473E081-5838
chr64453764344538138E0814332